I. Summary
SecReT6 ID250 insolico
StrainBordetella petrii DSM 12804
Repliconchromosome [Browse all T6SS(s) in this replicon]
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1Bpet24442558558..2562175 [-], 3618163856756hypothetical protein 
2Bpet24452562518..2564068 [+], 1551163856757hypothetical protein  TssA
3Bpet24462564095..2564613 [+], 519163856758hypothetical protein  TssB
4Bpet24472564617..2566104 [+], 1488163856759hypothetical protein  TssC
5Bpet24482566203..2566688 [+], 486163856760hypothetical protein  TssD
6Bpet24492566732..2567151 [+], 420163856761hypothetical protein  TssE
7Bpet24502567155..2568879 [+], 1725163856762hypothetical protein  TssF
8Bpet24512568843..2569889 [+], 1047163856763hypothetical protein  TssG
9Bpet24522569886..2572684 [+], 2799163856764ClpA/B-type protease  TssH
10Bpet24532572689..2575157 [+], 2469163856765hypothetical protein  TssI
11Bpet24542575165..2577786 [+], 2622163856766hypothetical protein 
12Bpet24552577773..2578723 [+], 951163856767hypothetical protein 
13Bpet24562578705..2579433 [+], 729163856768hypothetical protein 
14Bpet24572579447..2579851 [+], 405163856769hypothetical protein 
15Bpet24582579860..2580588 [+], 729163856770lipoprotein  TssJ
16Bpet24592580613..2582007 [+], 1395163856771hypothetical protein  TssK
17Bpet24602582011..2582682 [+], 672163856772hypothetical protein  TssL
18Bpet24612582710..2586621 [+], 3912163856773hypothetical protein  TssM
19Bpet24622586708..2586851 [+], 144163856774hypothetical protein 
20Bpet24632587078..2587545 [+], 468163856775hypothetical protein 
21Bpet24642587608..2588660 [+], 1053163856776hypothetical protein 
22Bpet24652588677..2590143 [-], 1467163856777sensory transduction histidine kinases 
23Bpet24662590140..2590856 [-], 717163856778two-component response regulator 
24Bpet24672590977..2591606 [+], 630163856779thiosulfate reductase cytochrome B subunit 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Homology Effector list

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1Bpet24482566203..2566688 [+], 486163856760hypothetical protein BTH_II0868

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Proteins        Genes