I. Summary

SecReT6 ID	251
Strain	Bordetella petrii DSM 12804
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_010170
Location	4336908..4357739
Comment
Function	N/A
T6SS Type	Type i; subtype i3
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	1	0	1	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	1

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	Bpet4097	4332125..4332883 [-], 759	163858415	rhodanese superfamily protein
2	Bpet4098	4332956..4333483 [-], 528	163858416	lipoprotein
3	Bpet4099	4333799..4334671 [+], 873	163858417	two-component response regulator
4	Bpet4100	4334675..4336129 [-], 1455	163858418	hypothetical protein
5	Bpet4101	4336161..4336865 [-], 705	163858419	hypothetical protein
6	Bpet4102	4336908..4340519 [-], 3612	163858420	hypothetical protein	TssM
7	Bpet4103	4340516..4341799 [-], 1284	163858421	hypothetical protein	TssL
8	Bpet4104	4341819..4343153 [-], 1335	163858422	hypothetical protein	TssK
9	Bpet4105	4343212..4343901 [-], 690	163858423	lipoprotein	TssJ
10	Bpet4106	4343978..4345147 [+], 1170	163858424	hypothetical protein	Fha
11	Bpet4107	4345165..4347864 [-], 2700	163858425	ATPase	TssH
12	Bpet4108	4347898..4348242 [-], 345	163858426	hypothetical protein
13	Bpet4109	4348274..4348795 [-], 522	163858427	hypothetical protein
14	Bpet4110	4348792..4349937 [-], 1146	163858428	hypothetical protein	TssG
15	Bpet4111	4349940..4350599 [-], 660	163858429	hypothetical protein
16	Bpet4112	4350645..4352549 [-], 1905	163858430	hypothetical protein	TssF
17	Bpet4113	4352549..4353109 [-], 561	163858431	hypothetical protein	TssE
18	Bpet4114	4353109..4353924 [-], 816	163858432	hypothetical protein	TagJ
19	Bpet4115	4354033..4354518 [-], 486	163858433	hypothetical protein	TssD
20	Bpet4116	4354573..4356075 [-], 1503	163858434	hypothetical protein	TssC
21	Bpet4117	4356094..4356648 [-], 555	163858435	hypothetical protein	TssB
22	Bpet4118	4356693..4357739 [-], 1047	163858436	hypothetical protein	TssA
23	Bpet4119	4358084..4359070 [+], 987	163858437	hypothetical protein
24	Bpet4120	4359045..4359518 [+], 474	163858438	ferrodoxin
25	Bpet4121	4359671..4360210 [-], 540	163858439	hypothetical protein
26	Bpet4122	4360343..4360531 [+], 189	163858440	hypothetical protein
27	Bpet4123	4360619..4361020 [+], 402	163858441	endoribonuclease
28	Bpet4124 (alkA)	4361108..4361764 [+], 657	163858442	DNA-3-methyladenine glycosidase II

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

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