SecReT6
I. Summary
SecReT6 ID254 experimental
StrainAcinetobacter baumannii SDF
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_010400
Location2061603..2081014
Comment
Functioneffector translocation
T6SS TypeType i; subtype i4b
experimental Experimental investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111011111
ComponentTssGTssJTssKTssM
Number1011
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1ABSDF_RS105552056677..2057855 [-], 1179446736533cyanate transporter 
2ABSDF_RS105602057855..2058337 [-], 483446569385nucleoside deaminase 
3ABSDF_RS105652058353..2059000 [-], 6481190339449ankyrin repeat domain-containing protein 
4ABSDF_RS105702059173..2060024 [+], 852446382331LysR family transcriptional regulator 
5ABSDF_RS105752060027..2060980 [-], 954446895327M15 family metallopeptidase 
6ABSDF_RS105802060988..2061590 [-], 603445968589hypothetical protein 
7ABSDF_RS105852061603..2062409 [-], 807446005770type IVB secretion system protein IcmH/DotU  TssL
8ABSDF_RS10590 (tssK)2062427..2063791 [-], 1365446393585type VI secretion system baseplate subunit TssK 
9ABSDF_RS10595 (tssA)2063808..2064902 [-], 1095445942859type VI secretion system protein TssA 
10ABSDF_RS10600 (tssH)2064926..2067607 [-], 26821605504011type VI secretion system ATPase TssH 
11ABSDF_RS106052067827..2068090 [-], 264446090254PAAR domain-containing protein 
12ABSDF_RS106102068107..2068874 [-], 768446995154OmpA family protein 
13ABSDF_RS10615 (tagF)2068877..2069836 [-], 960446479383type VI secretion system-associated protein TagF 
14ABSDF_RS10620 (tssM)2069874..2073698 [-], 3825446479051type VI secretion system membrane subunit TssM 
15ABSDF_RS106252073729..2075141 [-], 1413446514526hypothetical protein 
16ABSDF_RS10630 (tssG)2075138..2076136 [-], 999447113136type VI secretion system baseplate subunit TssG 
17ABSDF_RS10635 (tssF)2076100..2077911 [-], 1812446490974type VI secretion system baseplate subunit TssF 
18ABSDF_RS10640 (tssE)2077928..2078404 [-], 477446969775type VI secretion system baseplate subunit TssE  TssE
19ABSDF_RS106452078484..2078987 [-], 504446575849type VI secretion system tube protein Hcp  TssD
20ABSDF_RS10650 (tssC)2079037..2080518 [-], 1482446989266type VI secretion system contractile sheath large subunit 
21ABSDF_RS10655 (tssB)2080511..2081014 [-], 504447041787type VI secretion system contractile sheath small subunit 
22ABSDF_RS106602081031..2081723 [-], 693446792455hypothetical protein 
23ABSDF_RS106652082399..2083211 [-], 813446666020IS5 family transposase 
24ABSDF_RS106702083266..2083515 [-], 250pseudogenehypothetical protein 
25ABSDF_RS106752083733..2084953 [-], 1221446621277chloride channel protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
A1S_1296

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog

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Proteins        Genes
N/A
(1) Weber BS et al. (2013). Genomic and Functional Analysis of the Type VI Secretion System in Acinetobacter. PLoS One. 8(1):e55142. [PudMed:23365692] experimental
 
experimental This literature contains experimental investigation