 |
III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | ABAYE_RS12075 | 2439463..2440641 [-], 1179 | 446736570 | cyanate transporter | |
2 | ABAYE_RS12080 | 2440641..2441123 [-], 483 | 446569388 | nucleoside deaminase | |
3 | ABAYE_RS12085 | 2441139..2441807 [-], 669 | 447154947 | ankyrin repeat domain-containing protein | |
4 | ABAYE_RS12090 | 2441959..2442810 [+], 852 | 446382337 | LysR family transcriptional regulator | |
5 | ABAYE_RS12095 | 2442813..2443766 [-], 954 | 446895327 | M15 family metallopeptidase | |
6 | ABAYE_RS12100 | 2443774..2444376 [-], 603 | 445968591 | hypothetical protein | |
7 | ABAYE_RS12105 (icmH) | 2444389..2445195 [-], 807 | 446005774 | type IVB secretion system protein IcmH/DotU | TssL |
8 | ABAYE_RS12110 (tssK) | 2445213..2446577 [-], 1365 | 446393589 | type VI secretion system baseplate subunit TssK | TssK |
9 | ABAYE_RS12115 (tssA) | 2446594..2447688 [-], 1095 | 445942858 | type VI secretion system protein TssA | TssA |
10 | ABAYE_RS12120 (tssH) | 2447712..2450393 [-], 2682 | 446910578 | type VI secretion system ATPase TssH | TssH |
11 | ABAYE_RS12125 | 2450612..2450875 [-], 264 | 446090257 | PAAR domain-containing protein | |
12 | ABAYE_RS12130 | 2450892..2451659 [-], 768 | 446995154 | OmpA family protein | |
13 | ABAYE_RS12135 (tagF) | 2451662..2452621 [-], 960 | 446479387 | type VI secretion system-associated protein TagF | |
14 | ABAYE_RS12140 (tssM) | 2452659..2456483 [-], 3825 | 446479067 | type VI secretion system membrane subunit TssM | TssM |
15 | ABAYE_RS12145 | 2456514..2457926 [-], 1413 | 446514525 | hypothetical protein | |
16 | ABAYE_RS12150 (tssG) | 2457923..2458921 [-], 999 | 447113140 | type VI secretion system baseplate subunit TssG | TssG |
17 | ABAYE_RS12155 (tssF) | 2458885..2460696 [-], 1812 | 446490968 | type VI secretion system baseplate subunit TssF | TssF |
18 | ABAYE_RS12160 (tssE) | 2460713..2461189 [-], 477 | 446969775 | type VI secretion system baseplate subunit TssE | TssE |
19 | ABAYE_RS12165 | 2461269..2461772 [-], 504 | 446575849 | type VI secretion system tube protein Hcp | TssD |
20 | ABAYE_RS12170 (tssC) | 2461822..2463303 [-], 1482 | 446989267 | type VI secretion system contractile sheath large subunit | TssC |
21 | ABAYE_RS12175 (tssB) | 2463296..2463799 [-], 504 | 447041786 | type VI secretion system contractile sheath small subunit | TssB |
22 | ABAYE_RS12180 | 2463816..2464507 [-], 692 | pseudogene | hypothetical protein | |
23 | ABAYE_RS12185 | 2465596..2465997 [+], 402 | 445965495 | hypothetical protein | |
24 | ABAYE_RS12190 | 2466093..2467037 [+], 945 | 446464677 | ABC transporter permease | |
25 | ABAYE_RS12195 | 2467037..2467918 [+], 882 | 446922832 | ABC transporter ATP-binding protein | |
|
Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein