SecReT6
I. Summary
SecReT6 ID255 insolico
StrainAcinetobacter baumannii AYE
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_010410
Location2444389..2463799
Comment
FunctionN/A
T6SS TypeType i; subtype i4b
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111011111
ComponentTssGTssJTssKTssM
Number1011
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1ABAYE_RS120752439463..2440641 [-], 1179446736570cyanate transporter 
2ABAYE_RS120802440641..2441123 [-], 483446569388nucleoside deaminase 
3ABAYE_RS120852441139..2441807 [-], 669447154947ankyrin repeat domain-containing protein 
4ABAYE_RS120902441959..2442810 [+], 852446382337LysR family transcriptional regulator 
5ABAYE_RS120952442813..2443766 [-], 954446895327M15 family metallopeptidase 
6ABAYE_RS121002443774..2444376 [-], 603445968591hypothetical protein 
7ABAYE_RS12105 (icmH)2444389..2445195 [-], 807446005774type IVB secretion system protein IcmH/DotU  TssL
8ABAYE_RS12110 (tssK)2445213..2446577 [-], 1365446393589type VI secretion system baseplate subunit TssK  TssK
9ABAYE_RS12115 (tssA)2446594..2447688 [-], 1095445942858type VI secretion system protein TssA  TssA
10ABAYE_RS12120 (tssH)2447712..2450393 [-], 2682446910578type VI secretion system ATPase TssH  TssH
11ABAYE_RS121252450612..2450875 [-], 264446090257PAAR domain-containing protein 
12ABAYE_RS121302450892..2451659 [-], 768446995154OmpA family protein 
13ABAYE_RS12135 (tagF)2451662..2452621 [-], 960446479387type VI secretion system-associated protein TagF 
14ABAYE_RS12140 (tssM)2452659..2456483 [-], 3825446479067type VI secretion system membrane subunit TssM  TssM
15ABAYE_RS121452456514..2457926 [-], 1413446514525hypothetical protein 
16ABAYE_RS12150 (tssG)2457923..2458921 [-], 999447113140type VI secretion system baseplate subunit TssG  TssG
17ABAYE_RS12155 (tssF)2458885..2460696 [-], 1812446490968type VI secretion system baseplate subunit TssF  TssF
18ABAYE_RS12160 (tssE)2460713..2461189 [-], 477446969775type VI secretion system baseplate subunit TssE  TssE
19ABAYE_RS121652461269..2461772 [-], 504446575849type VI secretion system tube protein Hcp  TssD
20ABAYE_RS12170 (tssC)2461822..2463303 [-], 1482446989267type VI secretion system contractile sheath large subunit  TssC
21ABAYE_RS12175 (tssB)2463296..2463799 [-], 504447041786type VI secretion system contractile sheath small subunit  TssB
22ABAYE_RS121802463816..2464507 [-], 692pseudogenehypothetical protein 
23ABAYE_RS121852465596..2465997 [+], 402445965495hypothetical protein 
24ABAYE_RS121902466093..2467037 [+], 945446464677ABC transporter permease 
25ABAYE_RS121952467037..2467918 [+], 882446922832ABC transporter ATP-binding protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
A1S_1296

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog

Download FASTA format files
Proteins        Genes
N/A
(1) Weber BS et al. (2013). Genomic and Functional Analysis of the Type VI Secretion System in Acinetobacter. PLoS One. 8(1):e55142. [PudMed:23365692] experimental
 
experimental This literature contains experimental investigation

Genomics & Bioinformatics Group in MML, SJTU