I. Summary

SecReT6 ID	255
Strain	Acinetobacter baumannii AYE
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_010410
Location	2444389..2463799
Comment
Function	N/A
T6SS Type	Type i; subtype i4b
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	1	0	1	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	0	1	1

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	ABAYE2395	2439463..2440641 [-], 1179	169796434	MFS superfamily cyanate transport protein
2	ABAYE2396 (guaD)	2440641..2441123 [-], 483	169796435	guanine deaminase
3	ABAYE2397	2441139..2441849 [-], 711	169796436	ankyrin repeat-containing protein
4	ABAYE2398	2441959..2442810 [+], 852	169796437	LysR family transcriptional regulator
5	ABAYE2399	2442813..2443766 [-], 954	169796438	hypothetical protein
6	ABAYE2400	2443774..2444376 [-], 603	169796439	hypothetical protein
7	ABAYE2401	2444389..2445195 [-], 807	169796440	hypothetical protein	TssL
8	ABAYE2402	2445213..2446577 [-], 1365	169796441	hypothetical protein	TssK
9	ABAYE2403	2446594..2447688 [-], 1095	169796442	hypothetical protein	TssA
10	ABAYE2404	2447712..2450402 [-], 2691	169796443	ClpA/B-type chaperone	TssH
11	ABAYE2405	2450612..2450875 [-], 264	169796444	hypothetical protein	PAAR
12	ABAYE2406	2450892..2451659 [-], 768	169796445	outer membrane lipoprotein	TagL
13	ABAYE2407	2451662..2452657 [-], 996	169796446	hypothetical protein
14	ABAYE2408	2452659..2456483 [-], 3825	169796447	hypothetical protein	TssM
15	ABAYE2409	2456514..2457926 [-], 1413	169796448	hypothetical protein
16	ABAYE2410	2457923..2458921 [-], 999	169796449	hypothetical protein	TssG
17	ABAYE2411	2458885..2460696 [-], 1812	169796450	hypothetical protein	TssF
18	ABAYE2412	2460713..2461189 [-], 477	169796451	hypothetical protein	TssE
19	ABAYE2413	2461269..2461772 [-], 504	169796452	hypothetical protein	TssD
20	ABAYE2414	2461822..2463318 [-], 1497	169796453	hypothetical protein	TssC
21	ABAYE2415	2463296..2463799 [-], 504	169796454	hypothetical protein	TssB
22	ABAYE2416	2463816..2464349 [-], 534	169796455	hypothetical protein
23	ABAYE2418	2465596..2465997 [+], 402	169796456	hypothetical protein
24	ABAYE2419	2466093..2467037 [+], 945	169796457	ABC transporter membrane protein
25	ABAYE2420	2467016..2467918 [+], 903	169796458	ABC transporter ATP-binding protein

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

Homology Effector list

A1S_1296

Effector identified
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Homolog
1	ABAYE2413	2461269..2461772 [-], 504	169796452	hypothetical protein	A1S_1296

Download FASTA format files

Proteins        Genes

N/A

(1) Weber BS et al. (2013). Genomic and Functional Analysis of the Type VI Secretion System in Acinetobacter. PLoS One. 8(1):e55142. [PudMed:23365692]

This literature contains experimental investigation