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III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | YPK_RS03975 | 903021..903671 [+], 651 | 488144694 | CPBP family intramembrane metalloprotease | |
2 | YPK_RS03980 | 904122..904517 [+], 396 | 488144692 | lipoprotein | |
3 | YPK_RS03985 | 904585..904926 [+], 342 | pseudogene | IS1 family transposase | |
4 | YPK_RS23335 | 905419..905574 [+], 156 | 501260615 | hypothetical protein | |
5 | YPK_RS04000 (tssB) | 906784..907284 [+], 501 | 488141806 | type VI secretion system contractile sheath small subunit | TssB |
6 | YPK_RS04005 (tssC) | 907327..908877 [+], 1551 | 752489932 | type VI secretion system contractile sheath large subunit | |
7 | YPK_RS04010 (tssK) | 908889..910241 [+], 1353 | 499505437 | type VI secretion system baseplate subunit TssK | TssK |
8 | YPK_RS04015 | 910238..910924 [+], 687 | 501260617 | type VI secretion system protein TssL, short form | TssL |
9 | YPK_RS04020 | 910924..912660 [+], 1737 | 501260618 | OmpA family protein | TagL |
10 | YPK_RS04025 | 912664..913155 [+], 492 | 488138806 | Hcp family type VI secretion system effector | TssD |
11 | YPK_RS04030 (tssH) | 913543..916185 [+], 2643 | 501260619 | type VI secretion system ATPase TssH | TssH |
12 | YPK_RS04035 | 916188..918536 [+], 2349 | 501260620 | type VI secretion system tip protein VgrG | TssI |
13 | YPK_RS04040 | 918552..920849 [+], 2298 | 501260621 | M23 family metallopeptidase | |
14 | YPK_RS04045 | 920836..921603 [+], 768 | 488138800 | hypothetical protein | |
15 | YPK_RS22775 | 921699..922272 [+], 574 | pseudogene | IS1 family transposase | |
16 | YPK_RS21790 | 922937..923514 [+], 578 | pseudogene | DUF2345 domain-containing protein | |
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Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein