 |
III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | YPK_RS17830 (rapA) | 3902173..3905079 [+], 2907 | 499505079 | RNA polymerase-associated protein RapA | |
2 | YPK_RS17835 | 3905334..3905687 [-], 354 | 488139260 | hypothetical protein | |
3 | YPK_RS17840 (tssM) | 3905709..3909150 [-], 3442 | pseudogene | type VI secretion system membrane subunit TssM | |
4 | YPK_RS17845 | 3909212..3910822 [-], 1611 | 501261573 | type IVB secretion system protein IcmH/DotU | |
5 | YPK_RS17850 (tssK) | 3910819..3912174 [-], 1356 | 488139262 | type VI secretion system baseplate subunit TssK | |
6 | YPK_RS17855 (tssJ) | 3912294..3912785 [-], 492 | 501261574 | type VI secretion system lipoprotein TssJ | |
7 | YPK_RS17860 | 3912778..3913143 [-], 366 | 488143529 | DUF4150 domain-containing protein | |
8 | YPK_RS17865 | 3913149..3913766 [-], 618 | 488139265 | DUF3540 domain-containing protein | |
9 | YPK_RS17870 | 3913759..3914862 [-], 1104 | 488143531 | pentapeptide repeat-containing protein | |
10 | YPK_RS17875 | 3914888..3917107 [-], 2220 | 488152879 | pentapeptide repeat-containing protein | |
11 | YPK_RS17880 (vgrG) | 3917120..3919468 [-], 2349 | 499505075 | type VI secretion system tip protein VgrG | |
12 | YPK_RS17885 (tssH) | 3919572..3922160 [-], 2589 | 488139267 | type VI secretion system ATPase TssH | |
13 | YPK_RS17890 (tssG) | 3922178..3923161 [-], 984 | 501261575 | type VI secretion system baseplate subunit TssG | |
14 | YPK_RS17895 (tssF) | 3923154..3924998 [-], 1845 | 501261576 | type VI secretion system baseplate subunit TssF | |
15 | YPK_RS17900 | 3925031..3925474 [-], 444 | 488139270 | type VI secretion system baseplate subunit TssE | |
16 | YPK_RS17905 | 3925548..3926066 [-], 519 | 501261577 | type VI secretion system tube protein Hcp | |
17 | YPK_RS17910 (tssC) | 3926229..3927731 [-], 1503 | 488139272 | type VI secretion system contractile sheath large subunit | |
18 | YPK_RS17915 (tssB) | 3927740..3928300 [-], 561 | 488139273 | type VI secretion system contractile sheath small subunit | |
19 | YPK_RS17920 | 3928311..3929324 [-], 1014 | 488139274 | ImpA family type VI secretion system protein | |
20 | YPK_RS17925 | 3929654..3930397 [+], 744 | 488143539 | hexameric transcriptional regulator RovC | |
21 | YPK_RS17930 (rluA) | 3931620..3932240 [+], 621 | 488139277 | bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA | |
22 | YPK_RS17935 (djlA) | 3932557..3933390 [-], 834 | 501261578 | co-chaperone DjlA | |
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Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein