I. Summary
SecReT6 ID264 insolico
StrainBurkholderia cenocepacia MC0-3
Repliconchromosome I [Browse all T6SS(s) in this replicon]
T6SS TypeType i; subtype i4b
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1Bcenmc03_0430462502..463572 [-], 1071170731783helix-turn-helix domain-containing protein 
2Bcenmc03_0431463579..464247 [-], 669170731784hypothetical protein 
3Bcenmc03_0432464962..465165 [+], 204170731785hypothetical protein 
4Bcenmc03_0433465275..466075 [-], 801170731786extracellular solute-binding protein 
5Bcenmc03_0434466432..469623 [+], 3192170731787ImpA family type VI secretion-associated protein  TssI
6Bcenmc03_0435469675..474258 [+], 4584170731788YD repeat-containing protein 
7Bcenmc03_0436474269..474478 [+], 210170731789hypothetical protein 
8Bcenmc03_0437474702..476498 [+], 1797170731790YD repeat-containing protein 
9Bcenmc03_0438477482..477916 [+], 435170731791hypothetical protein 
10Bcenmc03_0439477992..478438 [+], 447170731792YD repeat-containing protein 
11Bcenmc03_0440478662..478979 [+], 318170731793hypothetical protein 
12Bcenmc03_0441479068..479850 [-], 783170731794hypothetical protein  TssL
13Bcenmc03_0442479847..481193 [-], 1347170731795type VI secretion protein  TssK
14Bcenmc03_0443481296..481907 [-], 612170731796hypothetical protein  TssJ
15Bcenmc03_0444482280..482915 [+], 636170731797hypothetical protein 
16Bcenmc03_0445482962..483477 [+], 516170731798type VI secretion protein  TssB
17Bcenmc03_0446483493..484983 [+], 1491170731799EvpB family type VI secretion protein  TssC
18Bcenmc03_0447485054..485557 [+], 504170731800Hcp1 family type VI secretion system effector  TssD
19Bcenmc03_0448485620..486105 [+], 486170731801type VI secretion system lysozyme-like protein  TssE
20Bcenmc03_0449486182..488017 [+], 1836170731802type VI secretion protein  TssF
21Bcenmc03_0450487981..489081 [+], 1101170731803type VI secretion protein  TssG
22Bcenmc03_0451489123..491792 [+], 2670170731804type VI secretion ATPase  TssH
23Bcenmc03_0452491837..492958 [+], 1122170731805ImpA family type VI secretion-associated protein  TssA
24Bcenmc03_0453493275..494105 [+], 831170731806hypothetical protein 
25Bcenmc03_0454494174..494347 [+], 174170731807hypothetical protein 
26Bcenmc03_0455494340..495260 [+], 921170731808hypothetical protein 
27Bcenmc03_0456495247..495429 [+], 183170731809hypothetical protein 
28Bcenmc03_0457495548..496498 [-], 951170731810OmpA/MotB domain-containing protein  TagL
29Bcenmc03_0458496503..497492 [-], 990170731811hypothetical protein 
30Bcenmc03_0459497489..501433 [-], 3945170731812type VI secretion protein IcmF  TssM
31Bcenmc03_0460501735..502580 [-], 846170731813peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin 
32Bcenmc03_0461502702..503694 [+], 993170731814hypothetical protein 
33Bcenmc03_0462503906..504934 [+], 1029170731815Mg2 transporter protein CorA family protein 
34Bcenmc03_0463504962..505114 [-], 153170731816hypothetical protein 
35Bcenmc03_0464505139..506116 [-], 978170731817alcohol dehydrogenase 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Homology Effector list
BCAL0343 , BTH_I2697, BTH_I2705

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1Bcenmc03_0447485054..485557 [+], 504170731800Hcp1 family type VI secretion system effector BCAL0343
2Bcenmc03_22092471828..2474515 [-], 2688170733545ImpA family type VI secretion-associated protein BTH_I2697
3Bcenmc03_22122476634..2479579 [-], 2946170733548ImpA family type VI secretion-associated protein BTH_I2705

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Proteins        Genes