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III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | RALTA_B1002 | 1045543..1045980 [-], 438 | 194291763 | hypothetical protein | |
2 | RALTA_B1004 | 1046381..1047253 [-], 873 | 194291764 | hypothetical protein | |
3 | RALTA_B1006 | 1047620..1048675 [-], 1056 | 194291765 | hypothetical protein | |
4 | RALTA_B1007 | 1048672..1050246 [-], 1575 | 194291766 | hypothetical protein | |
5 | RALTA_B1008 | 1050243..1053053 [-], 2811 | 194291767 | hypothetical protein | TssI |
6 | RALTA_B1009 | 1053132..1053926 [-], 795 | 194291768 | hypothetical protein | TssL |
7 | RALTA_B1010 | 1053923..1055269 [-], 1347 | 194291769 | hypothetical protein | TssK |
8 | RALTA_B1011 | 1055310..1056002 [-], 693 | 194291770 | hypothetical protein | TssJ |
9 | RALTA_B1012 | 1056260..1056889 [+], 630 | 194291771 | hypothetical protein | |
10 | RALTA_B1013 | 1056926..1057441 [+], 516 | 194291772 | hypothetical protein | TssB |
11 | RALTA_B1014 | 1057434..1058924 [+], 1491 | 194291773 | hypothetical protein | TssC |
12 | RALTA_B1015 | 1059019..1059522 [+], 504 | 194291774 | hypothetical protein | TssD |
13 | RALTA_B1016 | 1059583..1060056 [+], 474 | 194291775 | hypothetical protein | TssE |
14 | RALTA_B1017 | 1060152..1061990 [+], 1839 | 194291776 | hypothetical protein | TssF |
15 | RALTA_B1018 | 1061954..1063045 [+], 1092 | 194291777 | hypothetical protein | TssG |
16 | RALTA_B1019 (clpB2) | 1063126..1065855 [+], 2730 | 194291778 | chaperone clpb | TssH |
17 | RALTA_B1020 | 1065896..1068694 [+], 2799 | 194291779 | hypothetical protein | TssI |
18 | RALTA_B1021 | 1068771..1069640 [+], 870 | 194291780 | hypothetical protein | |
19 | RALTA_B1022 | 1069651..1072395 [+], 2745 | 194291781 | hypothetical protein | |
20 | RALTA_B1023 | 1072408..1073478 [+], 1071 | 194291782 | hypothetical protein | |
21 | RALTA_B1025 | 1073696..1074787 [+], 1092 | 194291783 | hypothetical protein | TssA |
22 | RALTA_B1026 | 1074820..1075713 [-], 894 | 194291784 | hypothetical protein | |
23 | RALTA_B1027 | 1075767..1076585 [-], 819 | 194291785 | outer membrane protein; ompa/motb domain | TagL |
24 | RALTA_B1028 | 1076642..1077631 [-], 990 | 194291786 | hypothetical protein | |
25 | RALTA_B1029 | 1077628..1081584 [-], 3957 | 194291787 | hypothetical protein | TssM |
26 | RALTA_B1030 | 1081649..1083136 [-], 1488 | 194291788 | hypothetical protein | |
27 | RALTA_B1031 | 1083195..1083464 [-], 270 | 194291789 | hypothetical protein | PAAR |
28 | RALTA_B1032 | 1083552..1084409 [-], 858 | 194291790 | hypothetical protein | |
29 | RALTA_B1033 | 1084683..1085525 [+], 843 | 194291791 | hypothetical protein | |
30 | RALTA_B1034 | 1085672..1088968 [+], 3297 | 194291792 | hypothetical protein | TssI |
31 | RALTA_B1035 (pld2) | 1088979..1091978 [+], 3000 | 194291793 | phospholipase d | |
32 | RALTA_B1036 | 1091991..1093391 [+], 1401 | 194291794 | hypothetical protein | |
33 | RALTA_B1037 | 1093426..1093767 [+], 342 | 194291795 | hypothetical protein | |
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Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein