SecReT6
I. Summary
SecReT6 ID267 insolico
StrainCupriavidus taiwanensis LMG 19424
Repliconchromosome II [Browse all T6SS(s) in this replicon]
AccessionNC_010530
Location1050243..1088968
Comment
FunctionN/A
T6SS TypeType i; subtype i4b
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111311111
ComponentTssGTssJTssKTssM
Number1111
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1RALTA_B10021045543..1045980 [-], 438194291763hypothetical protein 
2RALTA_B10041046381..1047253 [-], 873194291764hypothetical protein 
3RALTA_B10061047620..1048675 [-], 1056194291765hypothetical protein 
4RALTA_B10071048672..1050246 [-], 1575194291766hypothetical protein 
5RALTA_B10081050243..1053053 [-], 2811194291767hypothetical protein  TssI
6RALTA_B10091053132..1053926 [-], 795194291768hypothetical protein  TssL
7RALTA_B10101053923..1055269 [-], 1347194291769hypothetical protein  TssK
8RALTA_B10111055310..1056002 [-], 693194291770hypothetical protein  TssJ
9RALTA_B10121056260..1056889 [+], 630194291771hypothetical protein 
10RALTA_B10131056926..1057441 [+], 516194291772hypothetical protein  TssB
11RALTA_B10141057434..1058924 [+], 1491194291773hypothetical protein  TssC
12RALTA_B10151059019..1059522 [+], 504194291774hypothetical protein  TssD
13RALTA_B10161059583..1060056 [+], 474194291775hypothetical protein  TssE
14RALTA_B10171060152..1061990 [+], 1839194291776hypothetical protein  TssF
15RALTA_B10181061954..1063045 [+], 1092194291777hypothetical protein  TssG
16RALTA_B1019 (clpB2)1063126..1065855 [+], 2730194291778chaperone clpb  TssH
17RALTA_B10201065896..1068694 [+], 2799194291779hypothetical protein  TssI
18RALTA_B10211068771..1069640 [+], 870194291780hypothetical protein 
19RALTA_B10221069651..1072395 [+], 2745194291781hypothetical protein 
20RALTA_B10231072408..1073478 [+], 1071194291782hypothetical protein 
21RALTA_B10251073696..1074787 [+], 1092194291783hypothetical protein  TssA
22RALTA_B10261074820..1075713 [-], 894194291784hypothetical protein 
23RALTA_B10271075767..1076585 [-], 819194291785outer membrane protein; ompa/motb domain  TagL
24RALTA_B10281076642..1077631 [-], 990194291786hypothetical protein 
25RALTA_B10291077628..1081584 [-], 3957194291787hypothetical protein  TssM
26RALTA_B10301081649..1083136 [-], 1488194291788hypothetical protein 
27RALTA_B10311083195..1083464 [-], 270194291789hypothetical protein  PAAR
28RALTA_B10321083552..1084409 [-], 858194291790hypothetical protein 
29RALTA_B10331084683..1085525 [+], 843194291791hypothetical protein 
30RALTA_B10341085672..1088968 [+], 3297194291792hypothetical protein  TssI
31RALTA_B1035 (pld2)1088979..1091978 [+], 3000194291793phospholipase d 
32RALTA_B10361091991..1093391 [+], 1401194291794hypothetical protein 
33RALTA_B10371093426..1093767 [+], 342194291795hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
BCAL0343

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1RALTA_B10151059019..1059522 [+], 504194291774hypothetical protein BCAL0343

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Proteins        Genes
N/A
N/A

Genomics & Bioinformatics Group in MML, SJTU