SecReT6

T6SS
Effector
Immunity
Reference

I. Summary

SecReT6 ID	268
Strain	Burkholderia ambifaria MC40-6
Replicon	chromosome I [Browse all T6SS(s) in this replicon]
Accession	NC_010551
Location	430361..475470
Comment
Function	N/A
T6SS Type	Type i; subtype i4b
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	1	2	1	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	1


III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	BamMC406_0378	426299..426823 [+], 525	172059443	hypothetical protein
2	BamMC406_0381	428962..429165 [+], 204	172059444	hypothetical protein
3	BamMC406_0382	429248..430048 [-], 801	172059445	extracellular solute-binding protein
4	BamMC406_0383	430361..433534 [+], 3174	172059446	ImpA family type VI secretion-associated protein	TssI
5	BamMC406_0384	433585..438237 [+], 4653	172059447	YD repeat-containing protein
6	BamMC406_0385	438245..438649 [+], 405	172059448	hypothetical protein
7	BamMC406_0388	440771..440941 [+], 171	172059449	hypothetical protein
8	BamMC406_0389	441179..441742 [+], 564	172059450	hypothetical protein
9	BamMC406_0390	442312..442695 [+], 384	172059451	hypothetical protein
10	BamMC406_0391	443031..443510 [+], 480	172059452	hypothetical protein
11	BamMC406_0392	443691..444116 [+], 426	172059453	hypothetical protein
12	BamMC406_0393	444237..444488 [+], 252	172059454	hypothetical protein
13	BamMC406_0394	444482..444817 [+], 336	172059455	hypothetical protein
14	BamMC406_0395	445210..445518 [+], 309	172059456	hypothetical protein
15	BamMC406_0396	445535..445789 [+], 255	172059457	hypothetical protein
16	BamMC406_0397	446095..446460 [+], 366	172059458	hypothetical protein
17	BamMC406_0398	446554..447336 [-], 783	172059459	hypothetical protein	TssL
18	BamMC406_0399	447333..448679 [-], 1347	172059460	type VI secretion protein	TssK
19	BamMC406_0400	448784..449392 [-], 609	172059461	hypothetical protein	TssJ
20	BamMC406_0401	449769..450407 [+], 639	172059462	hypothetical protein
21	BamMC406_0402	450452..450967 [+], 516	172059463	type VI secretion protein	TssB
22	BamMC406_0403	450983..452473 [+], 1491	172059464	EvpB family type VI secretion protein	TssC
23	BamMC406_0404	452544..453047 [+], 504	172059465	Hcp1 family type VI secretion system effector	TssD
24	BamMC406_0405	453110..453595 [+], 486	172059466	type VI secretion system lysozyme-like protein	TssE
25	BamMC406_0406	453673..455508 [+], 1836	172059467	type VI secretion protein	TssF
26	BamMC406_0407	455472..456572 [+], 1101	172059468	type VI secretion protein	TssG
27	BamMC406_0408	456616..459285 [+], 2670	172059469	type VI secretion ATPase	TssH
28	BamMC406_0409	459325..460446 [+], 1122	172059470	ImpA family type VI secretion-associated protein	TssA
29	BamMC406_0410	460526..463087 [+], 2562	172059471	ImpA family type VI secretion-associated protein	TssI
30	BamMC406_0411	463087..464109 [+], 1023	172059472	hypothetical protein
31	BamMC406_0412	464096..464254 [+], 159	172059473	hypothetical protein
32	BamMC406_0413	464247..464402 [+], 156	172059474	hypothetical protein
33	BamMC406_0414	464414..465265 [+], 852	172059475	hypothetical protein
34	BamMC406_0415	465258..467552 [+], 2295	172059476	hypothetical protein
35	BamMC406_0416	467739..468674 [-], 936	172059477	hypothetical protein
36	BamMC406_0417	468873..469571 [-], 699	172059478	hypothetical protein
37	BamMC406_0418	469588..470538 [-], 951	172059479	OmpA/MotB domain-containing protein	TagL
38	BamMC406_0419	470543..471532 [-], 990	172059480	hypothetical protein
39	BamMC406_0420	471529..475470 [-], 3942	172059481	type VI secretion protein IcmF	TssM
40	BamMC406_0421	475772..476617 [-], 846	172059482	peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin
41	BamMC406_0422	476739..477701 [+], 963	172059483	hypothetical protein
42	BamMC406_0423	477869..478942 [+], 1074	172059484	Mg2 transporter protein CorA family protein

Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins Genes

V. Investigation of the genomic context of the T6SS gene cluster.

N/A