SecReT6

T6SS
Effector
Immunity
Reference

I. Summary

SecReT6 ID	269
Strain	Burkholderia ambifaria MC40-6
Replicon	chromosome I [Browse all T6SS(s) in this replicon]
Accession	NC_010551
Location	3329037..3362323
Comment
Function	N/A
T6SS Type	Type i; subtype i3
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	2	1	1	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	1


III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	BamMC406_3003	3324578..3325984 [-], 1407	172062043	integral membrane sensor signal transduction histidine kinase
2	BamMC406_3004	3326042..3326680 [+], 639	172062044	hypothetical protein
3	BamMC406_3005	3326638..3327537 [+], 900	172062045	acetylglutamate kinase
4	BamMC406_3006	3327534..3328325 [+], 792	172062046	pyrimidine 5'-nucleotidase
5	BamMC406_3007 (slmA)	3328292..3328957 [+], 666	172062047	nucleoid occlusion protein
6	BamMC406_3008	3329037..3331700 [-], 2664	172062048	type VI secretion ATPase	TssH
7	BamMC406_3009	3332219..3333238 [+], 1020	172062049	hypothetical protein
8	BamMC406_3010	3333225..3334079 [+], 855	172062050	virulence protein SciE type	TagJ
9	BamMC406_3011	3334063..3334584 [+], 522	172062051	type VI secretion system lysozyme-like protein	TssE
10	BamMC406_3012	3334586..3336466 [+], 1881	172062052	type VI secretion protein	TssF
11	BamMC406_3013	3336470..3337531 [+], 1062	172062053	type VI secretion protein	TssG
12	BamMC406_3014	3337528..3338586 [+], 1059	172062054	ImpA domain-containing protein	TssA
13	BamMC406_3015	3338628..3339659 [+], 1032	172062055	fimbrial protein
14	BamMC406_3016	3339699..3341054 [+], 1356	172062056	hypothetical protein
15	BamMC406_3017	3341168..3344617 [-], 3450	172062057	YD repeat-containing protein
16	BamMC406_3018	3344638..3344904 [-], 267	172062058	PAAR repeat-containing protein	PAAR
17	BamMC406_3019	3344989..3348135 [-], 3147	172062059	ImpA family type VI secretion-associated protein	TssI
18	BamMC406_3020	3348242..3348736 [-], 495	172062060	hypothetical protein
19	BamMC406_3021	3348786..3349571 [-], 786	172062061	putative cytoplasmic protein
20	BamMC406_3022	3349580..3353488 [-], 3909	172062062	type VI secretion protein IcmF	TssM
21	BamMC406_3023	3353503..3354807 [-], 1305	172062063	hypothetical protein	TssL
22	BamMC406_3024	3354804..3356153 [-], 1350	172062064	type VI secretion protein	TssK
23	BamMC406_3025	3356155..3356697 [-], 543	172062065	putative lipoprotein	TssJ
24	BamMC406_3026	3356832..3357314 [-], 483	172062066	hypothetical protein	TssD
25	BamMC406_3027	3357516..3359015 [-], 1500	172062067	EvpB family type VI secretion protein	TssC
26	BamMC406_3028	3359063..3359599 [-], 537	172062068	type VI secretion protein	TssB
27	BamMC406_3029	3359955..3361622 [-], 1668	172062069	OmpA/MotB domain-containing protein	TagL
28	BamMC406_3030	3361619..3362323 [-], 705	172062070	hypothetical protein	TssL
29	BamMC406_3031	3362358..3362921 [-], 564	172062071	fimbrial protein
30	BamMC406_3032	3362962..3365754 [-], 2793	172062072	fimbrial biogenesis outer membrane usher protein
31	BamMC406_3033	3365791..3366522 [-], 732	172062073	Pili assembly chaperone, N-terminal
32	BamMC406_3034	3366612..3367154 [-], 543	172062074	fimbrial protein

Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files

Proteins Genes

V. Investigation of the genomic context of the T6SS gene cluster.

Homology Effector list

BCAL0343

Effector identified
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Homolog
1	BamMC406_0404	452544..453047 [+], 504	172059465	Hcp1 family type VI secretion system effector	BCAL0343

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Proteins Genes

N/A