I. Summary

SecReT6 ID	27
Strain	Xanthomonas axonopodis pv. citri str. 306
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_003919
Location	4813368..4849929
Comment
Function	N/A
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	0	0	1	1	1	0	0	0	0
Component	TssG	TssJ	TssK	TssM
Number	0	0	1	1

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	XAC4106	4809007..4811409 [+], 2403	21244823	dipeptidyl peptidase
2	XAC4107	4811802..4812518 [+], 717	77748757	hypothetical protein
3	XAC4108	4812515..4813084 [+], 570	21244825	hypothetical protein
4	XAC4109 (hemF)	4813368..4814267 [+], 900	21244826	coproporphyrinogen III oxidase
5	XAC4110 (polA)	4815123..4817927 [-], 2805	21244827	DNA polymerase I
6	XAC4111	4818004..4818414 [+], 411	21244828	hypothetical protein
7	XAC4112	4818638..4819681 [-], 1044	21244829	hypothetical protein	TssA
8	XAC4113 (yapH)	4819731..4826966 [-], 7236	21244830	YapH protein
9	XAC4114 (shlB)	4826870..4828552 [-], 1683	21244831	hemolysin activator protein
10	XAC4115	4828543..4829004 [-], 462	21244832	hypothetical protein
11	XAC4116	4829001..4832708 [-], 3708	21244833	serine/threonine kinase
12	XAC4117 (ptc1)	4832713..4833429 [-], 717	21244834	phosphoprotein phosphatase
13	XAC4118	4833465..4833995 [-], 531	21244835	hypothetical protein
14	XAC4119	4833998..4837528 [-], 3531	21244836	hypothetical protein	TssM
15	XAC4120	4837525..4838880 [-], 1356	21244837	hypothetical protein	TssL
16	XAC4121	4838787..4840121 [-], 1335	21244838	hypothetical protein	TssK
17	XAC4122	4840701..4842017 [-], 1317	21244839	hypothetical protein	Fha
18	XAC4123	4842304..4842852 [-], 549	21244840	hypothetical protein
19	XAC4124	4842849..4844885 [-], 2037	21244841	hypothetical protein	TssI
20	XAC4125	4844967..4846298 [-], 1332	21244842	hypothetical protein
21	XAC4126	4846534..4846929 [-], 396	21244843	hypothetical protein	PAAR
22	XAC4127 (pknB)	4846892..4849189 [-], 2298	21244844	serine/threonine kinase
23	XAC4128 (ecfR)	4849390..4849929 [-], 540	21244845	extracytoplasmic sigma factor
24	XAC4129 (rpoE)	4850278..4850805 [+], 528	21244846	ECF sigma factor
25	XAC4130	4850802..4851872 [+], 1071	21244847	transmembrane sensor

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files

Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

N/A

N/A

(1) Boyer F et al. (2009). Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 10:104. [PudMed:19284603]

This literature contains bioinformatics investigation