I. Summary
SecReT6 ID27 insolico
StrainXanthomonas axonopodis pv. citri str. 306
Repliconchromosome [Browse all T6SS(s) in this replicon]
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1XAC41064809007..4811409 [+], 240321244823dipeptidyl peptidase 
2XAC41074811802..4812518 [+], 71777748757hypothetical protein 
3XAC41084812515..4813084 [+], 57021244825hypothetical protein 
4XAC4109 (hemF)4813368..4814267 [+], 90021244826coproporphyrinogen III oxidase 
5XAC4110 (polA)4815123..4817927 [-], 280521244827DNA polymerase I 
6XAC41114818004..4818414 [+], 41121244828hypothetical protein 
7XAC41124818638..4819681 [-], 104421244829hypothetical protein  TssA
8XAC4113 (yapH)4819731..4826966 [-], 723621244830YapH protein 
9XAC4114 (shlB)4826870..4828552 [-], 168321244831hemolysin activator protein 
10XAC41154828543..4829004 [-], 46221244832hypothetical protein 
11XAC41164829001..4832708 [-], 370821244833serine/threonine kinase 
12XAC4117 (ptc1)4832713..4833429 [-], 71721244834phosphoprotein phosphatase 
13XAC41184833465..4833995 [-], 53121244835hypothetical protein 
14XAC41194833998..4837528 [-], 353121244836hypothetical protein  TssM
15XAC41204837525..4838880 [-], 135621244837hypothetical protein  TssL
16XAC41214838787..4840121 [-], 133521244838hypothetical protein  TssK
17XAC41224840701..4842017 [-], 131721244839hypothetical protein  Fha
18XAC41234842304..4842852 [-], 54921244840hypothetical protein 
19XAC41244842849..4844885 [-], 203721244841hypothetical protein  TssI
20XAC41254844967..4846298 [-], 133221244842hypothetical protein 
21XAC41264846534..4846929 [-], 39621244843hypothetical protein  PAAR
22XAC4127 (pknB)4846892..4849189 [-], 229821244844serine/threonine kinase 
23XAC4128 (ecfR)4849390..4849929 [-], 54021244845extracytoplasmic sigma factor 
24XAC4129 (rpoE)4850278..4850805 [+], 52821244846ECF sigma factor 
25XAC41304850802..4851872 [+], 107121244847transmembrane sensor 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

(1) Boyer F et al. (2009). Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 10:104. [PudMed:19284603] in_silico
in_silico This literature contains bioinformatics investigation