I. Summary

SecReT6 ID	270
Strain	Burkholderia ambifaria MC40-6
Replicon	chromosome II [Browse all T6SS(s) in this replicon]
Accession	NC_010552
Location	588351..616025
Comment
Function	N/A
T6SS Type	Type i; subtype i2
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	1	1	1	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	1

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	BamMC406_3639	583804..585837 [+], 2034	172062671	NADH:flavin oxidoreductase/NADH oxidase
2	BamMC406_3640	586017..586421 [-], 405	172062672	hypothetical protein
3	BamMC406_3641	586574..587467 [-], 894	172062673	LysR family transcriptional regulator
4	BamMC406_3642	587554..588339 [+], 786	172062674	ribosyldihydronicotinamide dehydrogenase (quinone)
5	BamMC406_3643	588351..588773 [-], 423	172062675	type VI secretion system lysozyme-like protein	TssE
6	BamMC406_3644	588770..591478 [-], 2709	172062676	type VI secretion ATPase	TssH
7	BamMC406_3645	591574..592059 [-], 486	172062677	Hcp1 family type VI secretion system effector	TssD
8	BamMC406_3646	592154..593917 [-], 1764	172062678	OmpA/MotB domain-containing protein	TagL
9	BamMC406_3647	593929..594603 [-], 675	172062679	hypothetical protein	TssL
10	BamMC406_3648	594684..596033 [-], 1350	172062680	type VI secretion protein	TssK
11	BamMC406_3649	596614..597126 [+], 513	172062681	type VI secretion protein	TssB
12	BamMC406_3650	597200..598750 [+], 1551	172062682	EvpB family type VI secretion protein	TssC
13	BamMC406_3651	598829..601168 [+], 2340	172062683	Rhs element Vgr protein	TssI
14	BamMC406_3652	601178..603805 [+], 2628	172062684	chitinase-like protein
15	BamMC406_3653	603807..604364 [+], 558	172062685	hypothetical protein
16	BamMC406_3654	605906..607141 [+], 1236	172062686	hypothetical protein
17	BamMC406_3655	607138..610956 [+], 3819	172062687	hypothetical protein	TssM
18	BamMC406_3656	610965..612548 [+], 1584	172062688	type VI secretion-associated protein	TssA
19	BamMC406_3657	612558..614372 [+], 1815	172062689	type VI secretion protein	TssF
20	BamMC406_3658	614369..615493 [+], 1125	172062690	type VI secretion protein	TssG
21	BamMC406_3659	615507..616025 [+], 519	172062691	hypothetical protein	TssJ
22	BamMC406_3660	616090..616380 [-], 291	172062692	muconolactone delta-isomerase
23	BamMC406_3661	616424..617326 [-], 903	172062693	catechol 1,2-dioxygenase
24	BamMC406_3662	617363..618496 [-], 1134	172062694	muconate and chloromuconate cycloisomerase
25	BamMC406_3663	618588..619478 [+], 891	172062695	LysR family transcriptional regulator

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files

Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

Homology Effector list

EC042_4529

Effector identified
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Homolog
1	BamMC406_3645	591574..592059 [-], 486	172062677	Hcp1 family type VI secretion system effector	EC042_4529

Download FASTA format files

Proteins        Genes

N/A

N/A