I. Summary

SecReT6 ID	273
Strain	Acinetobacter baumannii ACICU
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_010611
Location	1397691..1417101
Comment
Function	N/A
T6SS Type	Type i; subtype i4b
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	1	0	1	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	0	1	1

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	ACICU_01291	1393570..1394451 [-], 882	184157611	nitrate/sulfonate/bicarbonate ABC transporter ATPase
2	ACICU_01292	1394451..1395395 [-], 945	184157612	nitrate/sulfonate/bicarbonate ABC transporter permease
3	ACICU_01293	1395491..1395892 [-], 402	184157613	hypothetical protein
4	ACICU_01294	1396981..1397193 [+], 213	184157614	hypothetical protein
5	ACICU_01295	1397168..1397674 [+], 507	184157615	hypothetical protein
6	ACICU_01296	1397691..1398194 [+], 504	184157616	hypothetical protein	TssB
7	ACICU_01297	1398187..1399668 [+], 1482	184157617	hypothetical protein	TssC
8	ACICU_01298	1399718..1400221 [+], 504	184157618	hemolysin-coregulated protein	TssD
9	ACICU_01299	1400301..1400777 [+], 477	184157619	hypothetical protein	TssE
10	ACICU_01300	1400794..1402605 [+], 1812	184157620	hypothetical protein	TssF
11	ACICU_01301	1402569..1403567 [+], 999	184157621	hypothetical protein	TssG
12	ACICU_01302	1403564..1404976 [+], 1413	184157622	hypothetical protein
13	ACICU_01303	1405007..1408831 [+], 3825	184157623	hypothetical protein	TssM
14	ACICU_01304	1408869..1409828 [+], 960	184157624	hypothetical protein
15	ACICU_01305	1409831..1410598 [+], 768	184157625	outer membrane protein	TagL
16	ACICU_01306	1410615..1410878 [+], 264	184157626	hypothetical protein	PAAR
17	ACICU_01307	1411100..1413778 [+], 2679	184157627	ATPase	TssH
18	ACICU_01308	1413802..1414896 [+], 1095	184157628	hypothetical protein	TssA
19	ACICU_01309	1414913..1416277 [+], 1365	184157629	hypothetical protein	TssK
20	ACICU_01310	1416295..1417101 [+], 807	184157630	hypothetical protein	TssL
21	ACICU_01311	1417114..1417716 [+], 603	184157631	hypothetical protein
22	ACICU_01312	1417784..1418677 [+], 894	184157632	hypothetical protein
23	ACICU_01313	1418680..1419531 [-], 852	184157633	transcriptional regulator
24	ACICU_01314	1419683..1420351 [+], 669	184157634	ankyrin repeat-containing protein
25	ACICU_01315	1420367..1420843 [+], 477	184157635	cytosine/adenosine deaminase
26	ACICU_01316	1420848..1422026 [+], 1179	184157636	cyanate permease

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

Homology Effector list

A1S_1296

Effector identified
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Homolog
1	ACICU_01298	1399718..1400221 [+], 504	184157618	hemolysin-coregulated protein	A1S_1296

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Proteins        Genes

N/A

N/A