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III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | ACICU_RS06590 | 1393570..1394451 [-], 882 | 446922835 | ABC transporter ATP-binding protein | |
2 | ACICU_RS06595 | 1394451..1395395 [-], 945 | 446464671 | ABC transporter permease | |
3 | ACICU_RS06600 | 1395491..1395892 [-], 402 | 445992937 | hypothetical protein | |
4 | ACICU_RS06605 | 1396981..1397674 [+], 694 | pseudogene | hypothetical protein | |
5 | ACICU_RS06610 (tssB) | 1397691..1398194 [+], 504 | 447041786 | type VI secretion system contractile sheath small subunit | TssB |
6 | ACICU_RS06615 (tssC) | 1398187..1399668 [+], 1482 | 446989267 | type VI secretion system contractile sheath large subunit | TssC |
7 | ACICU_RS06620 | 1399718..1400221 [+], 504 | 446575849 | type VI secretion system tube protein Hcp | TssD |
8 | ACICU_RS06625 (tssE) | 1400301..1400777 [+], 477 | 446969775 | type VI secretion system baseplate subunit TssE | TssE |
9 | ACICU_RS06630 (tssF) | 1400794..1402605 [+], 1812 | 446490978 | type VI secretion system baseplate subunit TssF | TssF |
10 | ACICU_RS06635 (tssG) | 1402569..1403567 [+], 999 | 447113139 | type VI secretion system baseplate subunit TssG | TssG |
11 | ACICU_RS06640 | 1403564..1404976 [+], 1413 | 446514536 | hypothetical protein | |
12 | ACICU_RS06645 (tssM) | 1405007..1408831 [+], 3825 | 446479061 | type VI secretion system membrane subunit TssM | TssM |
13 | ACICU_RS06650 (tagF) | 1408869..1409828 [+], 960 | 446479387 | type VI secretion system-associated protein TagF | |
14 | ACICU_RS06655 | 1409831..1410598 [+], 768 | 446995154 | OmpA family protein | |
15 | ACICU_RS06660 | 1410615..1410878 [+], 264 | 446090257 | PAAR domain-containing protein | |
16 | ACICU_RS06665 (tssH) | 1411097..1413778 [+], 2682 | 487927950 | type VI secretion system ATPase TssH | TssH |
17 | ACICU_RS06670 (tssA) | 1413802..1414896 [+], 1095 | 445942858 | type VI secretion system protein TssA | TssA |
18 | ACICU_RS06675 (tssK) | 1414913..1416277 [+], 1365 | 446393590 | type VI secretion system baseplate subunit TssK | TssK |
19 | ACICU_RS06680 | 1416295..1417101 [+], 807 | 446005770 | type IVB secretion system protein IcmH/DotU | TssL |
20 | ACICU_RS06685 | 1417114..1417716 [+], 603 | 445968596 | hypothetical protein | |
21 | ACICU_RS06690 | 1417724..1418677 [+], 954 | 446895327 | M15 family metallopeptidase | |
22 | ACICU_RS06695 | 1418680..1419531 [-], 852 | 446382329 | LysR family transcriptional regulator | |
23 | ACICU_RS06700 | 1419704..1420351 [+], 648 | 1190339449 | ankyrin repeat domain-containing protein | |
24 | ACICU_RS06705 | 1420367..1420843 [+], 477 | 501360309 | nucleoside deaminase | |
25 | ACICU_RS06710 | 1420848..1422026 [+], 1179 | 446736559 | cyanate transporter | |
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Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein