SecReT6
I. Summary
SecReT6 ID273 insolico
StrainAcinetobacter baumannii ACICU
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_010611
Location1397691..1417101
Comment
FunctionN/A
T6SS TypeType i; subtype i4b
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111011111
ComponentTssGTssJTssKTssM
Number1011
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1ACICU_RS065901393570..1394451 [-], 882446922835ABC transporter ATP-binding protein 
2ACICU_RS065951394451..1395395 [-], 945446464671ABC transporter permease 
3ACICU_RS066001395491..1395892 [-], 402445992937hypothetical protein 
4ACICU_RS066051396981..1397674 [+], 694pseudogenehypothetical protein 
5ACICU_RS06610 (tssB)1397691..1398194 [+], 504447041786type VI secretion system contractile sheath small subunit  TssB
6ACICU_RS06615 (tssC)1398187..1399668 [+], 1482446989267type VI secretion system contractile sheath large subunit  TssC
7ACICU_RS066201399718..1400221 [+], 504446575849type VI secretion system tube protein Hcp  TssD
8ACICU_RS06625 (tssE)1400301..1400777 [+], 477446969775type VI secretion system baseplate subunit TssE  TssE
9ACICU_RS06630 (tssF)1400794..1402605 [+], 1812446490978type VI secretion system baseplate subunit TssF  TssF
10ACICU_RS06635 (tssG)1402569..1403567 [+], 999447113139type VI secretion system baseplate subunit TssG  TssG
11ACICU_RS066401403564..1404976 [+], 1413446514536hypothetical protein 
12ACICU_RS06645 (tssM)1405007..1408831 [+], 3825446479061type VI secretion system membrane subunit TssM  TssM
13ACICU_RS06650 (tagF)1408869..1409828 [+], 960446479387type VI secretion system-associated protein TagF 
14ACICU_RS066551409831..1410598 [+], 768446995154OmpA family protein 
15ACICU_RS066601410615..1410878 [+], 264446090257PAAR domain-containing protein 
16ACICU_RS06665 (tssH)1411097..1413778 [+], 2682487927950type VI secretion system ATPase TssH  TssH
17ACICU_RS06670 (tssA)1413802..1414896 [+], 1095445942858type VI secretion system protein TssA  TssA
18ACICU_RS06675 (tssK)1414913..1416277 [+], 1365446393590type VI secretion system baseplate subunit TssK  TssK
19ACICU_RS066801416295..1417101 [+], 807446005770type IVB secretion system protein IcmH/DotU  TssL
20ACICU_RS066851417114..1417716 [+], 603445968596hypothetical protein 
21ACICU_RS066901417724..1418677 [+], 954446895327M15 family metallopeptidase 
22ACICU_RS066951418680..1419531 [-], 852446382329LysR family transcriptional regulator 
23ACICU_RS067001419704..1420351 [+], 6481190339449ankyrin repeat domain-containing protein 
24ACICU_RS067051420367..1420843 [+], 477501360309nucleoside deaminase 
25ACICU_RS067101420848..1422026 [+], 1179446736559cyanate transporter 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
A1S_1296

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog

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Proteins        Genes
N/A
N/A

Genomics & Bioinformatics Group in MML, SJTU