SecReT6
I. Summary
SecReT6 ID274 insolico
StrainBurkholderia phymatum STM815
Repliconplasmid pBPHY01 [Browse all T6SS(s) in this replicon]
AccessionNC_010625
Location510771..535444
Comment
FunctionN/A
T6SS TypeType i; subtype i4a
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111111
ComponentTssGTssJTssKTssM
Number1011
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1BPHY_RS29870506119..507693 [+], 1575501373632hybrid sensor histidine kinase/response regulator 
2BPHY_RS29875507744..509531 [-], 1788501373633hypothetical protein 
3BPHY_RS42665509595..509813 [-], 2191180257119hypothetical protein 
4BPHY_RS29885 (tssB)510771..511343 [+], 573501373635type VI secretion system contractile sheath small subunit 
5BPHY_RS29890 (tssC)511410..512918 [+], 1509501373636type VI secretion system contractile sheath large subunit 
6BPHY_RS29895512987..513475 [+], 489501373637type VI secretion system tube protein Hcp 
7BPHY_RS29900 (tssE)513551..514006 [+], 456501373638type VI secretion system baseplate subunit TssE 
8BPHY_RS29905 (tssF)514008..515765 [+], 1758754134319type VI secretion system baseplate subunit TssF 
9BPHY_RS29910 (tssG)515720..516853 [+], 1134501373640type VI secretion system baseplate subunit TssG 
10BPHY_RS29915 (tssH)516865..519594 [+], 2730501373641type VI secretion system ATPase TssH 
11BPHY_RS29920 (tssI)519599..521524 [+], 1926501373642type VI secretion system tip protein VgrG 
12BPHY_RS29925521533..522255 [+], 723501373643toxin-antitoxin system YwqK family antitoxin 
13BPHY_RS29930522278..522664 [+], 387501373644DUF4280 domain-containing protein 
14BPHY_RS29935522678..522953 [+], 276754134323hypothetical protein 
15BPHY_RS29940522967..523941 [+], 975501373646amino acid ABC transporter substrate-binding protein 
16BPHY_RS29945523973..525247 [+], 1275501373647cation:dicarboxylase symporter family transporter 
17BPHY_RS29950525256..525957 [+], 702501373648aspartate/glutamate racemase family protein 
18BPHY_RS29955525954..527378 [+], 1425501373649cation:dicarboxylase symporter family transporter 
19BPHY_RS29960527495..527887 [+], 3931787001889hypothetical protein 
20BPHY_RS29965 (tssK)527884..529218 [+], 1335501373651type VI secretion system baseplate subunit TssK 
21BPHY_RS29970529280..530032 [+], 753501373652DotU family type IV/VI secretion system protein 
22BPHY_RS29975530121..534299 [+], 4179501373653hypothetical protein 
23BPHY_RS29980 (tssA)534296..535444 [+], 1149501373654type VI secretion system protein TssA 
24BPHY_RS29985535602..536714 [+], 1113501373655hypothetical protein 
25BPHY_RS29990537050..537469 [+], 4201787001839helix-turn-helix domain-containing protein 
26BPHY_RS42080537603..537800 [-], 198754134324hypothetical protein 
27BPHY_RS30000538809..539006 [-], 198501373659hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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