 |
| III. genome coordinates of the T6SS gene cluster |
| # | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
| 1 | BPHY_RS29870 | 506119..507693 [+], 1575 | 501373632 | hybrid sensor histidine kinase/response regulator | |
| 2 | BPHY_RS29875 | 507744..509531 [-], 1788 | 501373633 | hypothetical protein | |
| 3 | BPHY_RS42665 | 509595..509813 [-], 219 | 1180257119 | hypothetical protein | |
| 4 | BPHY_RS29885 (tssB) | 510771..511343 [+], 573 | 501373635 | type VI secretion system contractile sheath small subunit | |
| 5 | BPHY_RS29890 (tssC) | 511410..512918 [+], 1509 | 501373636 | type VI secretion system contractile sheath large subunit | |
| 6 | BPHY_RS29895 | 512987..513475 [+], 489 | 501373637 | type VI secretion system tube protein Hcp | |
| 7 | BPHY_RS29900 (tssE) | 513551..514006 [+], 456 | 501373638 | type VI secretion system baseplate subunit TssE | |
| 8 | BPHY_RS29905 (tssF) | 514008..515765 [+], 1758 | 754134319 | type VI secretion system baseplate subunit TssF | |
| 9 | BPHY_RS29910 (tssG) | 515720..516853 [+], 1134 | 501373640 | type VI secretion system baseplate subunit TssG | |
| 10 | BPHY_RS29915 (tssH) | 516865..519594 [+], 2730 | 501373641 | type VI secretion system ATPase TssH | |
| 11 | BPHY_RS29920 (tssI) | 519599..521524 [+], 1926 | 501373642 | type VI secretion system tip protein VgrG | |
| 12 | BPHY_RS29925 | 521533..522255 [+], 723 | 501373643 | toxin-antitoxin system YwqK family antitoxin | |
| 13 | BPHY_RS29930 | 522278..522664 [+], 387 | 501373644 | DUF4280 domain-containing protein | |
| 14 | BPHY_RS29935 | 522678..522953 [+], 276 | 754134323 | hypothetical protein | |
| 15 | BPHY_RS29940 | 522967..523941 [+], 975 | 501373646 | amino acid ABC transporter substrate-binding protein | |
| 16 | BPHY_RS29945 | 523973..525247 [+], 1275 | 501373647 | cation:dicarboxylase symporter family transporter | |
| 17 | BPHY_RS29950 | 525256..525957 [+], 702 | 501373648 | aspartate/glutamate racemase family protein | |
| 18 | BPHY_RS29955 | 525954..527378 [+], 1425 | 501373649 | cation:dicarboxylase symporter family transporter | |
| 19 | BPHY_RS29960 | 527495..527887 [+], 393 | 1787001889 | hypothetical protein | |
| 20 | BPHY_RS29965 (tssK) | 527884..529218 [+], 1335 | 501373651 | type VI secretion system baseplate subunit TssK | |
| 21 | BPHY_RS29970 | 529280..530032 [+], 753 | 501373652 | DotU family type IV/VI secretion system protein | |
| 22 | BPHY_RS29975 | 530121..534299 [+], 4179 | 501373653 | hypothetical protein | |
| 23 | BPHY_RS29980 (tssA) | 534296..535444 [+], 1149 | 501373654 | type VI secretion system protein TssA | |
| 24 | BPHY_RS29985 | 535602..536714 [+], 1113 | 501373655 | hypothetical protein | |
| 25 | BPHY_RS29990 | 537050..537469 [+], 420 | 1787001839 | helix-turn-helix domain-containing protein | |
| 26 | BPHY_RS42080 | 537603..537800 [-], 198 | 754134324 | hypothetical protein | |
| 27 | BPHY_RS30000 | 538809..539006 [-], 198 | 501373659 | hypothetical protein | |
| |
Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein
SecReT6 ID
Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein