I. Summary

SecReT6 ID	274
Strain	Burkholderia phymatum STM815
Replicon	plasmid pBPHY01 [Browse all T6SS(s) in this replicon]
Accession	NC_010625
Location	510771..535444
Comment
Function	N/A
T6SS Type	Type i; subtype i4a
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	1	1	1	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	0	1	1

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	Bphy_5975	506119..507693 [+], 1575	186470766	histidine kinase
2	Bphy_5976	507744..509531 [-], 1788	186470767	hypothetical protein
3	Bphy_5977	509595..509987 [-], 393	186470768	hypothetical protein
4	Bphy_5978	510771..511343 [+], 573	186470769	type VI secretion protein	TssB
5	Bphy_5979	511410..512918 [+], 1509	186470770	EvpB family type VI secretion protein	TssC
6	Bphy_5980	512987..513475 [+], 489	186470771	hypothetical protein	TssD
7	Bphy_5981	513551..514006 [+], 456	186470772	type VI secretion system lysozyme-like protein	TssE
8	Bphy_5982	513996..515765 [+], 1770	186470773	type VI secretion protein	TssF
9	Bphy_5983	515720..516853 [+], 1134	186470774	type VI secretion protein	TssG
10	Bphy_5984	516865..519594 [+], 2730	186470775	type VI secretion ATPase	TssH
11	Bphy_5985	519599..521524 [+], 1926	186470776	ImpA family type VI secretion-associated protein	TssI
12	Bphy_5986	521533..522255 [+], 723	186470777	hypothetical protein
13	Bphy_5987	522278..522664 [+], 387	186470778	hypothetical protein
14	Bphy_5988	522708..522953 [+], 246	186470779	hypothetical protein
15	Bphy_5989	522967..523941 [+], 975	186470780	extracellular solute-binding protein
16	Bphy_5990	523973..525247 [+], 1275	186470781	sodium:dicarboxylate symporter
17	Bphy_5991	525256..525957 [+], 702	186470782	aspartate racemase
18	Bphy_5992	525954..527378 [+], 1425	186470783	sodium:dicarboxylate symporter
19	Bphy_5993	527375..527887 [+], 513	186470784	hypothetical protein
20	Bphy_5994	527884..529218 [+], 1335	186470785	type VI secretion protein	TssK
21	Bphy_5995	529280..530032 [+], 753	186470786	hypothetical protein	TssL
22	Bphy_5996	530121..534299 [+], 4179	186470787	IcmF-like protein	TssM
23	Bphy_5997	534296..535444 [+], 1149	186470788	ImpA family type VI secretion-associated protein	TssA
24	Bphy_5998	535602..536714 [+], 1113	186470789	hypothetical protein
25	Bphy_5999	536930..537469 [+], 540	186470790	AraC family transcriptional regulator
26	Bphy_6001	538103..538375 [-], 273	186470791	hypothetical protein
27	Bphy_6002	538530..538664 [-], 135	186470792	hypothetical protein
28	Bphy_6003	538809..539006 [-], 198	186470793	hypothetical protein

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

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