SecReT6
I. Summary
SecReT6 ID275 insolico
StrainBurkholderia phymatum STM815
Repliconplasmid pBPHY01 [Browse all T6SS(s) in this replicon]
AccessionNC_010625
Location654398..678783
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number112111111
ComponentTssGTssJTssKTssM
Number1111
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1BPHY_RS30465649579..650190 [+], 612501373753NIPSNAP family protein 
2BPHY_RS30470650235..651071 [+], 837501373754sugar phosphate isomerase/epimerase 
3BPHY_RS30475651189..652586 [+], 1398501373755MFS transporter 
4BPHY_RS30480652685..653527 [+], 843501373756IclR family transcriptional regulator 
5BPHY_RS30485654398..655630 [-], 1233501373757DotU/TssL family secretion system protein  TssL
6BPHY_RS30490 (tssM)655657..659703 [-], 4047501373758type VI secretion system membrane subunit TssM  TssM
7BPHY_RS30495 (tssL)659734..661077 [-], 1344501373759type VI secretion system protein TssL, long form  TssL
8BPHY_RS30500 (tssK)661145..662491 [-], 1347501373760type VI secretion system baseplate subunit TssK  TssK
9BPHY_RS30505 (tssJ)662515..663021 [-], 507501373761type VI secretion system lipoprotein TssJ  TssJ
10BPHY_RS30510663139..663624 [-], 486501373762type VI secretion system tube protein Hcp  TssD
11BPHY_RS30515 (tssC)663703..665196 [-], 1494501373763type VI secretion system contractile sheath large subunit  TssC
12BPHY_RS30520 (tssB)665221..665754 [-], 534501373764type VI secretion system contractile sheath small subunit  TssB
13BPHY_RS30525 (tssH)665804..668524 [-], 2721501373765type VI secretion system ATPase TssH  TssH
14BPHY_RS38875668949..669632 [+], 684501373766TagK domain-containing protein 
15BPHY_RS30535669629..670495 [+], 867501373767virulence protein SciE type  TagJ
16BPHY_RS30540 (tssE)670482..671033 [+], 552501373768type VI secretion system baseplate subunit TssE  TssE
17BPHY_RS30545 (tssF)671060..672949 [+], 1890501373769type VI secretion system baseplate subunit TssF  TssF
18BPHY_RS30550 (tssG)672949..674037 [+], 1089501373770type VI secretion system baseplate subunit TssG  TssG
19BPHY_RS30555674034..675119 [+], 1086501373771type VI secretion system ImpA family N-terminal domain-containing protein  TssA
20BPHY_RS30560675123..675779 [+], 657501373772hypothetical protein 
21BPHY_RS40095675751..676455 [+], 7051787001840hypothetical protein 
22BPHY_RS30565 (tssI)676639..678783 [+], 2145501373774type VI secretion system tip protein VgrG  TssI
23BPHY_RS38880678826..681066 [+], 2241501373775M23 family metallopeptidase 
24BPHY_RS40100681063..681656 [+], 594501373776hypothetical protein 
25BPHY_RS40105681696..681950 [+], 255501373777PAAR domain-containing protein  PAAR
26BPHY_RS38885681982..682656 [+], 675501373778hypothetical protein 
27BPHY_RS30575682617..683600 [+], 984918013613peptidoglycan DD-metalloendopeptidase family protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
SciK

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog

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Proteins        Genes
N/A
N/A