I. Summary
SecReT6 ID275 insolico
StrainBurkholderia phymatum STM815
Repliconplasmid pBPHY01 [Browse all T6SS(s) in this replicon]
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1Bphy_6103649579..650190 [+], 612186470888NIPSNAP family protein 
2Bphy_6104650235..651071 [+], 837186470889xylose isomerase domain-containing protein 
3Bphy_6105651189..652586 [+], 1398186470890major facilitator transporter 
4Bphy_6106652685..653527 [+], 843186470891IclR family transcriptional regulator 
5Bphy_6107654398..655630 [-], 1233186470892DotU family type IV/VI secretion system protein  TssL
6Bphy_6108655657..659703 [-], 4047186470893type VI secretion protein IcmF  TssM
7Bphy_6109659734..661077 [-], 1344186470894hypothetical protein  TssL
8Bphy_6110661145..662491 [-], 1347186470895type VI secretion protein  TssK
9Bphy_6111662515..663021 [-], 507186470896hypothetical protein  TssJ
10Bphy_6112663139..663624 [-], 486186470897Hcp1 family type VI secretion system effector  TssD
11Bphy_6113663703..665196 [-], 1494186470898EvpB family type VI secretion protein  TssC
12Bphy_6114665221..665754 [-], 534186470899type VI secretion protein  TssB
13Bphy_6115665804..668524 [-], 2721186470900type VI secretion ATPase  TssH
14Bphy_6116668949..669632 [+], 684186470901hypothetical protein 
15Bphy_6117669629..670495 [+], 867186470902virulence protein SciE type  TagJ
16Bphy_6118670482..671033 [+], 552186470903type VI secretion system lysozyme-like protein  TssE
17Bphy_6119671060..672949 [+], 1890186470904type VI secretion protein  TssF
18Bphy_6120672949..674037 [+], 1089186470905type VI secretion protein  TssG
19Bphy_6121674034..675119 [+], 1086186470906ImpA domain-containing protein  TssA
20Bphy_6122675123..675779 [+], 657186470907hypothetical protein 
21Bphy_6123675769..676455 [+], 687186470908hypothetical protein 
22Bphy_6124676639..678783 [+], 2145186470909ImpA family type VI secretion-associated protein  TssI
23Bphy_6125678826..681066 [+], 2241186470910peptidase M23B 
24Bphy_6126681063..681656 [+], 594186470911hypothetical protein 
25Bphy_6127681696..681950 [+], 255186470912PAAR repeat-containing protein  PAAR
26Bphy_6128681982..682656 [+], 675186470913hypothetical protein 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Homology Effector list

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1Bphy_6112663139..663624 [-], 486186470897Hcp1 family type VI secretion system effector SciK

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Proteins        Genes