I. Summary
SecReT6 ID277 insolico
StrainYersinia pseudotuberculosis PB1/+
Repliconchromosome [Browse all T6SS(s) in this replicon]
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1YPTS_0660 (djlA)736894..737727 [+], 834186893989Dna-J like membrane chaperone protein 
2YPTS_0661738044..738664 [-], 621186893990pseudouridine synthase 
3YPTS_0662739887..740630 [-], 744186893991hypothetical protein 
4YPTS_0663740987..741973 [+], 987186893992ImpA domain-containing protein  TssA
5YPTS_0664741984..742544 [+], 561186893993type VI secretion protein  TssB
6YPTS_0665742544..744055 [+], 1512186893994EvpB family type VI secretion protein  TssC
7YPTS_0666744218..744736 [+], 519186893995hypothetical protein  TssD
8YPTS_0667744810..745253 [+], 444186893996type VI secretion system lysozyme-like protein  TssE
9YPTS_0668745286..747130 [+], 1845186893997type VI secretion protein  TssF
10YPTS_0669747123..748106 [+], 984186893998type VI secretion protein  TssG
11YPTS_0670748124..750712 [+], 2589186893999type VI secretion ATPase  TssH
12YPTS_0671750816..753164 [+], 2349186894000ImpA family type VI secretion-associated protein  TssI
13YPTS_0672753177..755396 [+], 2220186894001pentapeptide repeat-containing protein 
14YPTS_0673755422..756525 [+], 1104186894002pentapeptide repeat-containing protein 
15YPTS_0674756518..757135 [+], 618186894003hypothetical protein 
16YPTS_0675757141..757506 [+], 366186894004hypothetical protein  PAAR
17YPTS_0676757499..757990 [+], 492186894005putative lipoprotein  TssJ
18YPTS_0677758110..759465 [+], 1356186894006type VI secretion protein  TssK
19YPTS_0678759462..761072 [+], 1611186894007hypothetical protein  TssL
20YPTS_0679761081..764575 [+], 3495186894008type VI secretion protein IcmF  TssM
21YPTS_0680764597..764950 [+], 354186894009hypothetical protein 
22YPTS_0681765098..765244 [+], 147186894010hypothetical protein 
23YPTS_0682765206..768112 [-], 2907186894011ATP-dependent helicase HepA 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Homology Effector list
YPK_3563 , YPK_3558

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1YPTS_0666744218..744736 [+], 519186893995hypothetical protein YPK_3563
2YPTS_0671750816..753164 [+], 2349186894000ImpA family type VI secretion-associated protein YPK_3558

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Proteins        Genes