I. Summary
SecReT6 ID278 insolico
StrainYersinia pseudotuberculosis PB1/+
Repliconchromosome [Browse all T6SS(s) in this replicon]
T6SS TypeType i; subtype i2
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1YPTS_15831771027..1771746 [+], 720186894897enoyl-CoA hydratase/isomerase 
2YPTS_15841771748..1772500 [+], 753186894898polyketide biosynthesis enoyl-CoA hydratase 
3YPTS_15851772503..1773291 [+], 789186894899short-chain dehydrogenase/reductase SDR 
4YPTS_15861773486..1773818 [+], 333186894900hypothetical protein 
5YPTS_15871773856..1774104 [+], 249186894901putative acyl carrier protein 
6YPTS_15881774203..1775051 [+], 849186894902putative acyltransferase 
7YPTS_15891775107..1775349 [+], 243186894903hypothetical protein 
8YPTS_15901776014..1776514 [+], 501186894904type VI secretion protein  TssB
9YPTS_15911776563..1778107 [+], 1545186894905EvpB family type VI secretion protein  TssC
10YPTS_15921778119..1779471 [+], 1353186894906type VI secretion protein  TssK
11YPTS_15931779468..1780154 [+], 687186894907hypothetical protein  TssL
12YPTS_15941780154..1781899 [+], 1746186894908OmpA/MotB domain-containing protein  TagL
13YPTS_15951781903..1782394 [+], 492186894909Hcp1 family type VI secretion system effector  TssD
14YPTS_15961782782..1785430 [+], 2649186894910type VI secretion ATPase  TssH
15YPTS_15971785427..1787925 [+], 2499186894911ImpA family type VI secretion-associated protein  TssI
16YPTS_15981788043..1789314 [+], 1272186894912hypothetical protein 
17YPTS_15991789384..1789713 [+], 330186894913putative lipoprotein 
18YPTS_16001790029..1792731 [+], 2703186894914ImpA family type VI secretion-associated protein  TssI
19YPTS_16011792734..1793150 [+], 417186894915hypothetical protein 
20YPTS_16021793159..1794907 [+], 1749186894916peptidoglycan-binding LysM 
21YPTS_16031794912..1795424 [+], 513186894917hypothetical protein 
22YPTS_16041795901..1796044 [+], 144186894918hypothetical protein 
23YPTS_16051796204..1797436 [+], 1233186894919hypothetical protein 
24YPTS_16061797433..1800855 [+], 3423186894920ImcF domain-containing protein  TssM
25YPTS_16071800899..1802500 [+], 1602186894921type VI secretion-associated protein  TssA
26YPTS_16081802518..1803576 [+], 1059186894922hypothetical protein  PAAR
27YPTS_16091803576..1804046 [+], 471186894923hypothetical protein 
28YPTS_16101804267..1806030 [+], 1764186894924type VI secretion protein  TssF
29YPTS_16111805994..1807079 [+], 1086186894925type VI secretion protein  TssG
30YPTS_16121807054..1807635 [+], 582186894926hypothetical protein  TssJ
31YPTS_16131807635..1808087 [+], 453186894927type VI secretion system lysozyme-like protein  TssE
32YPTS_16141808111..1809478 [+], 1368186894928ImpA domain-containing protein  TssA
33YPTS_16151809690..1810313 [-], 624186894929hypothetical protein 
34YPTS_16161810996..1812591 [+], 1596186894930ABC transporter-like protein 
35YPTS_16171812819..1813466 [+], 648186894931hypothetical protein 
36YPTS_16181813538..1814308 [-], 771186894932molybdopterin biosynthesis protein MoeB 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Homology Effector list

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1YPTS_15951781903..1782394 [+], 492186894909Hcp1 family type VI secretion system effector EC042_4529

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Proteins        Genes