I. Summary
SecReT6 ID279 insolico
StrainYersinia pseudotuberculosis PB1/+
Repliconchromosome [Browse all T6SS(s) in this replicon]
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1YPTS_27473046190..3046657 [-], 468186896052hypothetical protein 
2YPTS_27483047274..3047816 [+], 543186896053LemA family protein 
3YPTS_27493047821..3049860 [+], 2040186896054hypothetical protein 
4YPTS_27503050236..3050577 [+], 342186896055alkylphosphonate utilization operon protein PhnA 
5YPTS_27513050652..3050999 [-], 348186896056membrane protein 
6YPTS_27523051024..3051503 [-], 480186896057type VI secretion system lysozyme-like protein  TssE
7YPTS_27533051568..3052374 [-], 807186896058virulence protein SciE type  TagJ
8YPTS_27543052394..3053242 [-], 849186896059hypothetical protein 
9YPTS_27553053242..3053502 [-], 261186896060hypothetical protein  PAAR
10YPTS_27563053601..3056531 [-], 2931186896061ImpA family type VI secretion-associated protein  TssI
11YPTS_27573056858..3060685 [-], 3828186896062type VI secretion protein IcmF  TssM
12YPTS_27583060694..3062070 [-], 1377186896063type VI secretion system OmpA/MotB family protein  TssL
13YPTS_27593062067..3063416 [-], 1350186896064type VI secretion protein  TssK
14YPTS_27603063420..3063980 [-], 561186896065hypothetical protein  TssJ
15YPTS_27613064233..3064802 [-], 570186896066Hcp1 family type VI secretion system effector  TssD
16YPTS_27623065051..3066553 [-], 1503186896067EvpB family type VI secretion protein  TssC
17YPTS_27633066577..3067101 [-], 525186896068type VI secretion protein  TssB
18YPTS_27643067207..3067815 [-], 609186896069fimbrial protein 
19YPTS_27653067800..3070472 [-], 2673186896070fimbrial biogenesis outer membrane usher protein 
20YPTS_27663070600..3071361 [-], 762186896071Pili assembly chaperone, N-terminal 
21YPTS_27673071518..3072063 [-], 546186896072fimbrial protein 
22YPTS_27683072274..3074931 [-], 2658186896073type VI secretion ATPase  TssH
23YPTS_27693075760..3077595 [+], 1836186896074type VI secretion protein  TssF
24YPTS_27703077595..3078620 [+], 1026186896075type VI secretion protein  TssG
25YPTS_27713078719..3079912 [+], 1194186896076ImpA domain-containing protein  TssA
26YPTS_27723079919..3080950 [+], 1032186896077hypothetical protein 
27YPTS_27733080990..3082327 [+], 1338186896078hypothetical protein 
28YPTS_27763083026..3084708 [+], 1683186896079OmpA/MotB domain-containing protein  TagL
29YPTS_27773084705..3085187 [+], 483186896080hypothetical protein 
30YPTS_27783085560..3086162 [-], 603186896081LuxR family transcriptional regulator 
31YPTS_27793087410..3088504 [-], 1095186896082murein hydrolase B 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Homology Effector list

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1YPTS_27613064233..3064802 [-], 570186896066Hcp1 family type VI secretion system effector ROD_27741

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Proteins        Genes