I. Summary
SecReT6 ID28 insolico
StrainXanthomonas axonopodis pv. citri str. 306
Repliconchromosome [Browse all T6SS(s) in this replicon]
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1XAC4132 (appA)4855361..4856611 [+], 1251777487586-phytase 
2XAC41334856619..4857986 [+], 136821244850hypothetical protein 
3XAC41344858039..4858398 [+], 36021244851hypothetical protein 
4XAC41354858635..4859336 [-], 70221244852hypothetical protein 
5XAC41364859777..4861771 [-], 199521244853hypothetical protein 
6XAC41374862893..4864107 [+], 121521244854ISxac1 transposase 
7XAC41384864112..4864522 [+], 41121244855transposase 
8XAC41394864528..4865544 [-], 101721244856hypothetical protein 
9XAC4140 (clpB)4865531..4868311 [-], 278121244857chaperone ClpB  TssH
10XAC41414868367..4869407 [-], 104121244858hypothetical protein  TssG
11XAC41424869371..4871254 [-], 188421244859hypothetical protein  TssF
12XAC41434871259..4871762 [-], 50421244860hypothetical protein  TssE
13XAC41444871768..4872607 [-], 84021244861hypothetical protein  TagJ
14XAC41454872761..4873264 [-], 50421244862hypothetical protein  TssD
15XAC41464873345..4874838 [-], 149421244863hypothetical protein  TssC
16XAC41474874842..4875351 [-], 51021244864hypothetical protein  TssB
17XAC4148 (feaR)4875665..4876336 [+], 67221244865transcriptional regulator 
18XAC41494876433..4876879 [-], 44721244866hypothetical protein 
19XAC4150 (nodL)4877137..4877715 [-], 57921244867nodulation protein 
20XAC4151 (uvrD)4878411..4880603 [-], 219321244868DNA-dependent helicase II 
21XAC41524880837..4882228 [-], 139221244869hypothetical protein 
22XAC4153 (cls)4882485..4883900 [-], 141621244870cardiolipin synthase 
23XAC4154 (fldY)4883920..4885227 [-], 130821244871transcriptional regulator 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

(1) Boyer F et al. (2009). Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 10:104. [PudMed:19284603] in_silico
in_silico This literature contains bioinformatics investigation