SecReT6
I. Summary
SecReT6 ID280 insolico
StrainYersinia pseudotuberculosis PB1/+
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_010634
Location3733805..3745581
Comment
FunctionN/A
T6SS TypeType i; subtype i2
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111101100
ComponentTssGTssJTssKTssM
Number0010
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1YPTS_33743728809..3729240 [-], 432186896674rhs element Vgr protein 
2YPTS_33753729340..3729444 [-], 105186896675rhs element Vgr protein 
3YPTS_33763730366..3730641 [-], 276186896676insertion element protein 
4YPTS_33773731058..3731567 [-], 510186896677hypothetical protein 
5YPTS_33783731568..3733790 [-], 2223186896678peptidase M23 
6YPTS_33793733805..3736153 [-], 2349186896679ImpA family type VI secretion-associated protein  TssI
7YPTS_33803736150..3738798 [-], 2649186896680type VI secretion ATPase  TssH
8YPTS_33813739216..3739707 [-], 492186896681Hcp1 family type VI secretion system effector  TssD
9YPTS_33823739711..3741447 [-], 1737186896682OmpA/MotB domain-containing protein  TagL
10YPTS_33833741447..3742133 [-], 687186896683hypothetical protein  TssL
11YPTS_33843742130..3743482 [-], 1353186896684type VI secretion protein  TssK
12YPTS_33853743494..3745032 [-], 1539186896685EvpB family type VI secretion protein  TssC
13YPTS_33863745081..3745581 [-], 501186896686type VI secretion protein  TssB
14YPTS_33873746791..3746946 [-], 156186896687hypothetical protein 
15YPTS_33883746989..3747360 [-], 372186896688hypothetical protein 
16YPTS_33893747517..3747780 [-], 264186896689insertion element protein 
17YPTS_33903747848..3748177 [-], 330186896690lipoprotein 
18YPTS_33913748694..3749344 [-], 651186896691abortive infection protein 
19YPTS_33923749888..3750010 [-], 123186896692hypothetical protein 
20YPTS_33933750045..3750191 [-], 147186896693hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
EC042_4529

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1YPTS_33813739216..3739707 [-], 492186896681Hcp1 family type VI secretion system effector EC042_4529

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Proteins        Genes
N/A
N/A