I. Summary
SecReT6 ID281 insolico
StrainYersinia pseudotuberculosis PB1/+
Repliconchromosome [Browse all T6SS(s) in this replicon]
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1YPTS_37994233133..4233636 [+], 504186897097RbsD or FucU transporter 
2YPTS_38004233796..4234662 [-], 867186897098AraC family transcriptional regulator 
3YPTS_38014234932..4236062 [+], 1131186897099oxidoreductase domain-containing protein 
4YPTS_38024236059..4236958 [+], 900186897100xylose isomerase domain-containing protein 
5YPTS_38034237235..4237468 [-], 234186897101putative rhs accessory genetic element  TssI
6YPTS_38044237669..4237950 [-], 282186897102hypothetical protein 
7YPTS_38054237947..4242509 [-], 4563186897103YD repeat-containing protein  PAAR
8YPTS_38064242554..4242976 [-], 423186897104hypothetical protein 
9YPTS_38074242979..4245177 [-], 2199186897105ImpA family type VI secretion-associated protein  TssI
10YPTS_38084245199..4246512 [-], 1314186897106ImpA domain-containing protein  TssA
11YPTS_38094246637..4250170 [-], 3534186897107type VI secretion protein IcmF  TssM
12YPTS_38104250202..4251590 [-], 1389186897108type VI secretion-associated protein  TssA
13YPTS_38114251596..4252282 [-], 687186897109hypothetical protein 
14YPTS_38124252279..4253076 [-], 798186897110Fis family transcriptional regulator 
15YPTS_38134253073..4255676 [-], 2604186897111type VI secretion ATPase  TssH
16YPTS_38144255687..4256454 [-], 768186897112membrane protein  TssL
17YPTS_38154256454..4257800 [-], 1347186897113type VI secretion protein  TssK
18YPTS_38164257803..4258348 [-], 546186897114lipoprotein  TssJ
19YPTS_38174258348..4259664 [-], 1317186897115FHA domain-containing protein  Fha
20YPTS_38184259790..4260878 [-], 1089186897116type VI secretion protein  TssG
21YPTS_38194260842..4262662 [-], 1821186897117type VI secretion protein  TssF
22YPTS_38204262662..4263102 [-], 441186897118type VI secretion system lysozyme-like protein  TssE
23YPTS_38214263109..4264590 [-], 1482186897119EvpB family type VI secretion protein  TssC
24YPTS_38224264658..4265155 [-], 498186897120type VI secretion protein  TssB
25YPTS_38234265679..4266197 [+], 519186897121Hcp1 family type VI secretion system effector  TssD
26YPTS_38244266140..4266358 [-], 219186897122hypothetical protein 
27YPTS_38254266349..4266627 [-], 279186897123hypothetical protein 
28YPTS_38264267099..4268010 [-], 912186897124maltose regulon periplasmic protein 
29YPTS_3827 (lamB)4268251..4269522 [-], 1272186897125maltoporin 
30YPTS_38284269593..4270702 [-], 1110186897126maltose/maltodextrin transporter ATP-binding protein 
31YPTS_38294270690..4271052 [-], 363186897127glycosidase 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Homology Effector list

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1YPTS_38234265679..4266197 [+], 519186897121Hcp1 family type VI secretion system effector ECA2866

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Proteins        Genes