I. Summary

SecReT6 ID	282
Strain	Bordetella avium 197N
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_010645
Location	268341..301427
Comment
Function	N/A
T6SS Type	Type i; subtype i4a
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	1	1	1	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	0	1	1

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	BAV0256 (proB)	263485..264618 [-], 1134	187476770	gamma-glutamyl kinase
2	BAV0257 (obgE)	264697..265815 [-], 1119	187476771	GTPase ObgE
3	BAV0258 (rpmA)	265998..266258 [-], 261	187476772	50S ribosomal protein L27
4	BAV0259 (rplU)	266291..266602 [-], 312	187476773	50S ribosomal protein L21
5	BAV0260 (cel)	266947..267912 [+], 966	187476774	octaprenyl-diphosphate synthase
6	BAV0261	268341..268616 [-], 276	187476775	hypothetical protein
7	BAV0262	268628..270964 [-], 2337	187476776	bifunctional protein include phospholipase and oxidoreductase
8	BAV0263 (bdhA)	271008..271793 [-], 786	187476777	3-hydroxybutyrate dehydrogenase
9	BAV0264 (adc)	271841..272581 [-], 741	187476778	acetoacetate decarboxylase
10	BAV0265	273187..273738 [+], 552	187476779	hypothetical protein	TssB
11	BAV0266	273790..275283 [+], 1494	187476780	hypothetical protein	TssC
12	BAV0267	275344..275820 [+], 477	187476781	hypothetical protein	TssD
13	BAV0268	275829..276233 [+], 405	187476782	hypothetical protein	TssE
14	BAV0269	276250..277992 [+], 1743	187476783	hypothetical protein	TssF
15	BAV0270	277989..278903 [+], 915	187476784	hypothetical protein	TssG
16	BAV0271	278906..281524 [+], 2619	187476785	ATPase with chaperone activity	TssH
17	BAV0272	281517..283367 [+], 1851	187476786	hypothetical protein	TssI
18	BAV0273	283367..283996 [+], 630	187476787	hypothetical protein
19	BAV0274	283993..284379 [+], 387	187476788	hypothetical protein
20	BAV0275	284383..284535 [+], 153	187476789	membrane protein
21	BAV0276	284535..285467 [+], 933	187476790	extracellular solute-binding protein
22	BAV0277	285511..286755 [+], 1245	187476791	transport protein
23	BAV0278	286850..288160 [+], 1311	187476792	transport protein
24	BAV0279	288157..288609 [+], 453	187476793	lipoprotein
25	BAV0280	288651..289940 [+], 1290	187476794	hypothetical protein	TssK
26	BAV0281	289937..290680 [+], 744	187476795	hypothetical protein	TssL
27	BAV0282	290714..294478 [+], 3765	187476796	hypothetical protein	TssM
28	BAV0283	294475..295488 [+], 1014	187476797	hypothetical protein	TssA
29	BAV0284	295613..296482 [+], 870	187476798	hypothetical protein
30	BAV0285	296612..298021 [-], 1410	187476799	amidase
31	BAV0286	298069..299295 [-], 1227	187476800	branched-chain amino acid binding protein
32	BAV0287	299415..300341 [+], 927	187476801	LysR family transcriptional regulator
33	BAV0288	300438..301427 [+], 990	187476802	branched-chain amino acid transport permease
34	BAV0289	301438..302319 [+], 882	187476803	branched-chain amino acid transport permease
35	BAV0290	302333..303040 [+], 708	187476804	branched-chain amino acid ABC transporter ATP-binding protein
36	BAV0291	303042..303782 [+], 741	187476805	branched-chain amino acid ABC transporter ATP-binding protein
37	BAV0292	303898..304734 [-], 837	187476806	metallo-phosphoesterase
38	BAV0293	304769..305713 [-], 945	187476807	membrane protein

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

N/A

N/A

(1) Boyer F et al. (2009). Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 10:104. [PudMed:19284603]

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