I. Summary

SecReT6 ID	283
Strain	Burkholderia phytofirmans PsJN
Replicon	chromosome II [Browse all T6SS(s) in this replicon]
Accession	NC_010676
Location	1034218..1054147
Comment
Function	N/A
T6SS Type	Type i; subtype i4b
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	1	0	1	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	1

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	Bphyt_4905	1029756..1030007 [+], 252	187919608	hypothetical protein
2	Bphyt_4906	1030272..1031378 [+], 1107	187919609	TrkA-N domain-containing protein
3	Bphyt_4907	1031424..1032359 [+], 936	187919610	ornithine cyclodeaminase/mu-crystallin
4	Bphyt_4908	1032663..1034144 [+], 1482	187919611	glucose-6-phosphate 1-dehydrogenase
5	Bphyt_4909	1034218..1035000 [-], 783	187919612	type IV / VI secretion system protein, DotU family	TssL
6	Bphyt_4910	1034997..1036343 [-], 1347	187919613	type VI secretion protein	TssK
7	Bphyt_4911	1036452..1037084 [-], 633	187919614	type VI secretion protein	TssJ
8	Bphyt_4912	1037439..1038122 [+], 684	187919615	tetratricopeptide repeat-containing protein
9	Bphyt_4913	1038159..1038707 [+], 549	187919616	type VI secretion protein	TssB
10	Bphyt_4914	1038722..1040212 [+], 1491	187919617	EvpB family type VI secretion protein	TssC
11	Bphyt_4915	1040290..1040793 [+], 504	187919618	type VI secretion system effector, Hcp1 family	TssD
12	Bphyt_4916	1040879..1041358 [+], 480	187919619	type VI secretion system lysozyme-like protein	TssE
13	Bphyt_4917	1041478..1043316 [+], 1839	187919620	type VI secretion protein	TssF
14	Bphyt_4918	1043280..1044374 [+], 1095	187919621	type VI secretion protein	TssG
15	Bphyt_4919	1044410..1047085 [+], 2676	187919622	type VI secretion ATPase, ClpV1 family	TssH
16	Bphyt_4920	1047140..1048249 [+], 1110	187919623	type VI secretion-associated protein, ImpA family	TssA
17	Bphyt_4921	1048325..1049287 [-], 963	187919624	OmpA/MotB domain-containing protein	TagL
18	Bphyt_4922	1049292..1050284 [-], 993	187919625	type VI secretion-associated protein
19	Bphyt_4923	1050281..1054147 [-], 3867	187919626	type VI secretion protein IcmF	TssM
20	Bphyt_4924	1054407..1055048 [-], 642	187919627	peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin
21	Bphyt_4925	1055377..1056312 [+], 936	187919628	hypothetical protein
22	Bphyt_4926	1056523..1057665 [+], 1143	187919629	inosine/uridine-preferring nucleoside hydrolase
23	Bphyt_4927	1057707..1058663 [-], 957	187919630	LysR family transcriptional regulator

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

Homology Effector list

BCAL0343

Effector identified
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Homolog
1	Bphyt_4915	1040290..1040793 [+], 504	187919618	type VI secretion system effector, Hcp1 family	BCAL0343

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Proteins        Genes

N/A

N/A