I. Summary
SecReT6 ID284 insolico
StrainBurkholderia phytofirmans PsJN
Repliconchromosome I [Browse all T6SS(s) in this replicon]
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1Bphyt_09291043465..1043770 [-], 306187922930urease subunit beta 
2Bphyt_0930 (ureA)1043786..1044088 [-], 303187922931urease subunit gamma 
3Bphyt_09311044264..1045067 [-], 804187922932family 3 extracellular solute-binding protein 
4Bphyt_09321045319..1046404 [-], 1086187922933hypothetical protein 
5Bphyt_09331046459..1048156 [-], 1698187922934hypothetical protein 
6Bphyt_09341048323..1052312 [-], 3990187922935type VI secretion protein IcmF  TssM
7Bphyt_09351052341..1053585 [-], 1245187922936hypothetical protein  TssL
8Bphyt_09361053731..1055074 [-], 1344187922937type VI secretion protein  TssK
9Bphyt_09371055087..1055599 [-], 513187922938type VI secretion lipoprotein  TssJ
10Bphyt_09381055671..1056153 [-], 483187922939hypothetical protein  TssD
11Bphyt_09391056373..1056804 [-], 432187922940hypothetical protein 
12Bphyt_09401056906..1058405 [-], 1500187922941type VI secretion protein EvpB  TssC
13Bphyt_09411058476..1059021 [-], 546187922942type VI secretion protein  TssB
14Bphyt_09421059058..1061778 [-], 2721187922943type VI secretion ATPase, ClpV1 family  TssH
15Bphyt_09431062472..1063080 [+], 609187922944hypothetical protein 
16Bphyt_09441063077..1063949 [+], 873187922945virulence protein SciE type  TagJ
17Bphyt_09451063946..1064482 [+], 537187922946type VI secretion system lysozyme-like protein  TssE
18Bphyt_09461064498..1066387 [+], 1890187922947type VI secretion protein  TssF
19Bphyt_09471066387..1067499 [+], 1113187922948type VI secretion protein  TssG
20Bphyt_09481067492..1068598 [+], 1107187922949ImpA domain-containing protein  TssA
21Bphyt_09491068876..1069757 [-], 882187922950urease accessory protein UreD 
22Bphyt_09501069875..1070567 [-], 693187922951urea ABC transporter ATP-binding protein 
23Bphyt_09511070600..1071466 [-], 867187922952urea ABC transporter ATP-binding protein 
24Bphyt_09521071463..1072647 [-], 1185187922953urea ABC transporter permease 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Homology Effector list

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1Bphyt_09381055671..1056153 [-], 483187922939hypothetical protein ROD_27741

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Proteins        Genes