I. Summary

SecReT6 ID	285
Strain	Erwinia tasmaniensis Et1/99
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_010694
Location	672050..706940
Comment
Function	N/A
T6SS Type	Type i; subtype i3
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	1	2	1	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	1

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	ETA_06060 (rsmC)	667818..668846 [-], 1029	188532753	16S ribosomal RNA m2G1207 methyltransferase
2	ETA_06070 (holD)	669022..669441 [+], 420	188532754	DNA polymerase III subunit psi
3	ETA_06080 (rimI)	669404..669844 [+], 441	188532755	ribosomal-protein-alanine N-acetyltransferase
4	ETA_06090 (yjjG)	669859..670539 [+], 681	188532756	nucleotidase
5	ETA_06100	671390..672031 [+], 642	188532757	hypothetical protein
6	ETA_06110	672050..672568 [+], 519	188532758	lipoprotein	TssJ
7	ETA_06120	672588..673931 [+], 1344	188532759	hypothetical protein	TssK
8	ETA_06130	673949..675190 [+], 1242	188532760	hypothetical protein	TssL
9	ETA_06140	675194..678823 [+], 3630	188532761	hypothetical protein	TssM
10	ETA_06150	678834..679550 [+], 717	188532762	hypothetical protein
11	ETA_06160	679568..680587 [+], 1020	188532763	hypothetical protein	TssA
12	ETA_06170	680650..681186 [+], 537	188532764	hypothetical protein	TssB
13	ETA_06180	681190..682692 [+], 1503	188532765	hypothetical protein	TssC
14	ETA_06190	682689..682964 [+], 276	188532766	hypothetical protein
15	ETA_06200	683237..683719 [+], 483	188532767	hypothetical protein	TssD
16	ETA_06210	683799..684278 [+], 480	188532768	hypothetical protein	Ssp2 (e)
17	ETA_06220	684263..684631 [+], 369	188532769	hypothetical protein
18	ETA_06230	685173..685580 [+], 408	188532770	hypothetical protein
19	ETA_06240	685891..686430 [+], 540	188532771	hypothetical protein
20	ETA_06250	686427..686834 [+], 408	188532772	hypothetical protein
21	ETA_06260	686982..688811 [+], 1830	188532773	Forkhead-associated (FHA) protein	Fha
22	ETA_06270	688811..689605 [+], 795	188532774	protein phosphatase 2C-like protein
23	ETA_06280	689623..690630 [+], 1008	188532775	hypothetical protein
24	ETA_06290	690640..691461 [+], 822	188532776	hypothetical protein	TagJ
25	ETA_06300	691458..692024 [+], 567	188532777	hypothetical protein	TssE
26	ETA_06310	692042..693916 [+], 1875	188532778	hypothetical protein	TssF
27	ETA_06320	693913..694971 [+], 1059	188532779	hypothetical protein	TssG
28	ETA_06330	695013..695741 [+], 729	188532780	hypothetical protein
29	ETA_06340	695773..696093 [+], 321	188532781	hypothetical protein
30	ETA_06350	696188..698803 [+], 2616	188532782	ClpA/B-type chaperone	TssH
31	ETA_06360	698833..700239 [+], 1407	188532783	Serine/threonine protein kinase
32	ETA_06370	700286..702910 [+], 2625	188532784	Rhs element Vgr protein	TssI
33	ETA_06380	702912..703289 [+], 378	188532785	hypothetical protein
34	ETA_06390	703415..704092 [+], 678	188532786	hypothetical protein
35	ETA_06400	704221..704613 [+], 393	188532787	hypothetical protein
36	ETA_06410	704799..706940 [+], 2142	188532788	Rhs element Vgr protein subfamily	TssI
37	ETA_06420	706943..708097 [+], 1155	188532789	hypothetical protein
38	ETA_06430	708090..709343 [+], 1254	188532790	phospholipase A1
39	ETA_06440	709442..710119 [+], 678	188532791	lipoprotein
40	ETA_06450	710098..710526 [+], 429	188532792	hypothetical protein

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files

Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

Homology Effector list

SMA2263 , SMA2264

Effector identified
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Homolog
1	ETA_06200	683237..683719 [+], 483	188532767	hypothetical protein	SMA2263
2	ETA_06210	683799..684278 [+], 480	188532768	hypothetical protein	SMA2264

Download FASTA format files

Proteins        Genes

N/A

(1) Thapa SP et al. (2013). Comparative genomics of Japanese Erwinia pyrifoliae strain Ejp617 with closely related erwinias. Genome. 56(2):83-90. [PudMed:23517317]

(2) De Maayer P et al. (2011). Comparative genomics of the Type VI secretion systems of Pantoea and Erwinia species reveals the presence of putative effector islands that may be translocated by the VgrG and Hcp proteins. BMC Genomics. 12:576. [PudMed:22115407]

(3) Smits TH et al. (2010). Complete genome sequence of the fire blight pathogen Erwinia pyrifoliae DSM 12163T and comparative genomic insights into plant pathogenicity. BMC Genomics. 11:02. [PudMed:20047678]

This literature contains bioinformatics investigation