I. Summary

SecReT6 ID	286
Strain	Xanthomonas oryzae pv. oryzae PXO99A
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_010717
Location	1586899..1620261
Comment
Function	N/A
T6SS Type	Type i; subtype i3
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	1	2	1	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	0	1	1

13

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	PXO_00273	1582371..1582553 [-], 183	188575801	hypothetical protein
2	PXO_00272	1583130..1585964 [-], 2835	188575802	hypothetical protein
3	PXO_00271	1585961..1586890 [-], 930	188575803	hypothetical protein
4	PXO_00270	1586899..1589661 [-], 2763	188575804	Rhs element Vgr protein	TssI
5	PXO_00269	1589955..1590419 [+], 465	188575805	isrso17-ISXo8 transposase
6	PXO_00268	1590400..1590993 [+], 594	188575806	ISXo8 transposase
7	PXO_00267	1591206..1592174 [-], 969	188575807	ISXo1 transposase
8	PXO_00266	1592594..1593046 [+], 453	188575808	hypothetical protein	TssB
9	PXO_00265 (sciI)	1593051..1594553 [+], 1503	188575809	SciI protein	TssC
10	PXO_00264	1594653..1595156 [+], 504	188575810	hypothetical protein	TssD
11	PXO_00263 (impE)	1595192..1596025 [+], 834	188575811	ImpE protein	TagJ
12	PXO_00262	1596013..1596516 [+], 504	188575812	hypothetical protein	TssE
13	PXO_00261 (sciC)	1596520..1598397 [+], 1878	188575813	SciC protein	TssF
14	PXO_00260	1598361..1599371 [+], 1011	188575814	hypothetical protein	TssG
15	PXO_00259 (clpB)	1599404..1602109 [+], 2706	188575815	chaperone ClpB	TssH
16	PXO_00258	1603417..1603668 [+], 252	188575816	transposase
17	PXO_00257	1603743..1604201 [+], 459	188575817	hypothetical protein
18	PXO_00256	1604466..1606403 [+], 1938	188575818	Rhs-family protein	TssI
19	PXO_00254	1606412..1606951 [+], 540	188575819	hypothetical protein
20	PXO_00253	1606948..1608360 [+], 1413	188575820	FHA domain-containing protein	Fha
21	PXO_00252 (impJ)	1608357..1609694 [+], 1338	188575821	protein ImpJ	TssK
22	PXO_00251 (ompA)	1609696..1611012 [+], 1317	188575822	OmpA family membrane protein	TssL
23	PXO_00250 (sciS)	1611016..1614474 [+], 3459	188575823	SciS protein	TssM
24	PXO_00249	1614480..1615118 [+], 639	188575824	hypothetical protein
25	PXO_00248	1615187..1615837 [+], 651	188575825	phosphoprotein phosphatase
26	PXO_00247	1615834..1618737 [+], 2904	188575826	protein kinase
27	PXO_00246	1618734..1619060 [+], 327	188575827	hypothetical protein
28	PXO_00245	1619233..1620261 [-], 1029	188575828	ImpA-related N-terminal family	TssA
29	PXO_00244 (lysR)	1620270..1621217 [-], 948	188575829	LysR family transcriptional regulator
30	PXO_00243	1621364..1623796 [-], 2433	188575830	two-component VirA-like sensor kinase
31	PXO_00242	1623820..1624812 [-], 993	188575831	cytochrome C peroxidase

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files

Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

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