SecReT6

T6SS
Effector
Immunity
Reference

I. Summary

SecReT6 ID	287
Strain	Xanthomonas oryzae pv. oryzae PXO99A
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_010717
Location	3845766..3891788
Comment
Function	N/A
T6SS Type	Type i; subtype i4b
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	1	7	0	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	0


III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	PXO_02064	3841305..3842849 [+], 1545	188577915	type I restriction enzyme EcoKI M protein
2	PXO_02063	3842827..3844332 [+], 1506	188577916	type I restriction-modification system subunit S
3	PXO_02062	3844366..3844629 [-], 264	188577917	plasmid stabilization system
4	PXO_02061	3844681..3845022 [-], 342	188577918	hypothetical protein
5	PXO_02060	3845766..3846431 [+], 666	188577919	Rhs element Vgr protein	TssI
6	PXO_02059	3846725..3847387 [-], 663	188577920	hypothetical protein
7	PXO_02058	3847757..3850255 [-], 2499	188577921	hypothetical protein
8	PXO_02057	3850257..3851000 [-], 744	188577922	hypothetical protein
9	PXO_02056	3851297..3854158 [-], 2862	188577923	hypothetical protein
10	PXO_02055	3854177..3854656 [-], 480	188577924	hypothetical protein
11	PXO_02054	3855024..3857573 [-], 2550	188577925	Rhs element Vgr protein	TssI
12	PXO_02053	3857577..3857786 [-], 210	188577926	VGR-related protein	TssI
13	PXO_02052	3857879..3858232 [-], 354	188577927	hypothetical protein
14	PXO_02051 (clpV)	3858283..3861015 [-], 2733	188577928	type VI secretion ATPase, ClpV1 family	TssH
15	PXO_02050	3861101..3862192 [-], 1092	188577929	hypothetical protein	TssG
16	PXO_02049 (evpF)	3862156..3863991 [-], 1836	188577930	EvpF protein	TssF
17	PXO_02048	3863994..3864482 [-], 489	188577931	hypothetical protein	TssE
18	PXO_05695	3864492..3864626 [-], 135	188577932	hypothetical protein
19	PXO_02047	3864630..3865127 [-], 498	188577933	Hcp family protein	TssD
20	PXO_02046 (evpB)	3865269..3866765 [-], 1497	188577934	EvpB protein	TssC
21	PXO_02045 (evpA)	3866769..3867269 [-], 501	188577935	EvpA protein	TssB
22	PXO_02044	3867316..3867804 [-], 489	188577936	hypothetical protein
23	PXO_02043	3868191..3868799 [+], 609	188577937	lipoprotein	TssJ
24	PXO_02042	3868984..3870285 [+], 1302	188577938	hypothetical protein	TssK
25	PXO_02041	3870285..3871073 [+], 789	188577939	hypothetical protein	TssL
26	PXO_02040	3871084..3873627 [+], 2544	188577940	Rhs element Vgr protein	TssI
27	PXO_02039	3873652..3876546 [+], 2895	188577941	EF hand domain-containing protein
28	PXO_02038	3877381..3878814 [+], 1434	188577942	Rhs element Vgr protein	TssI
29	PXO_02037	3878818..3881073 [+], 2256	188577943	hypothetical protein
30	PXO_02036	3881635..3883398 [+], 1764	188577944	Rhs element Vgr protein	TssI
31	PXO_02035	3883433..3883822 [-], 390	188577945	Rhs element Vgr protein
32	PXO_02034	3883803..3885965 [-], 2163	188577946	hypothetical protein
33	PXO_02033	3886034..3886582 [-], 549	188577947	hypothetical protein
34	PXO_02032	3886624..3887523 [-], 900	188577948	hypothetical protein
35	PXO_02031	3887592..3888101 [-], 510	188577949	hypothetical protein
36	PXO_02030	3888181..3889005 [-], 825	188577950	hypothetical protein
37	PXO_02029	3889002..3891788 [-], 2787	188577951	Rhs element Vgr protein	TssI
38	PXO_02028	3891991..3892269 [-], 279	188577952	hypothetical protein
39	PXO_02027	3892440..3893297 [-], 858	188577953	pirin
40	PXO_02026	3893529..3895601 [+], 2073	188577954	carbon starvation protein A
41	PXO_02025	3895601..3895825 [+], 225	188577955	hypothetical protein
42	PXO_05696	3895856..3895969 [-], 114	188577956	hypothetical protein

Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins Genes

V. Investigation of the genomic context of the T6SS gene cluster.

N/A