 |
III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | PXO_02064 | 3841305..3842849 [+], 1545 | 188577915 | type I restriction enzyme EcoKI M protein | |
2 | PXO_02063 | 3842827..3844332 [+], 1506 | 188577916 | type I restriction-modification system subunit S | |
3 | PXO_02062 | 3844366..3844629 [-], 264 | 188577917 | plasmid stabilization system | |
4 | PXO_02061 | 3844681..3845022 [-], 342 | 188577918 | hypothetical protein | |
5 | PXO_02060 | 3845766..3846431 [+], 666 | 188577919 | Rhs element Vgr protein | TssI |
6 | PXO_02059 | 3846725..3847387 [-], 663 | 188577920 | hypothetical protein | |
7 | PXO_02058 | 3847757..3850255 [-], 2499 | 188577921 | hypothetical protein | |
8 | PXO_02057 | 3850257..3851000 [-], 744 | 188577922 | hypothetical protein | |
9 | PXO_02056 | 3851297..3854158 [-], 2862 | 188577923 | hypothetical protein | |
10 | PXO_02055 | 3854177..3854656 [-], 480 | 188577924 | hypothetical protein | |
11 | PXO_02054 | 3855024..3857573 [-], 2550 | 188577925 | Rhs element Vgr protein | TssI |
12 | PXO_02053 | 3857577..3857786 [-], 210 | 188577926 | VGR-related protein | TssI |
13 | PXO_02052 | 3857879..3858232 [-], 354 | 188577927 | hypothetical protein | |
14 | PXO_02051 (clpV) | 3858283..3861015 [-], 2733 | 188577928 | type VI secretion ATPase, ClpV1 family | TssH |
15 | PXO_02050 | 3861101..3862192 [-], 1092 | 188577929 | hypothetical protein | TssG |
16 | PXO_02049 (evpF) | 3862156..3863991 [-], 1836 | 188577930 | EvpF protein | TssF |
17 | PXO_02048 | 3863994..3864482 [-], 489 | 188577931 | hypothetical protein | TssE |
18 | PXO_05695 | 3864492..3864626 [-], 135 | 188577932 | hypothetical protein | |
19 | PXO_02047 | 3864630..3865127 [-], 498 | 188577933 | Hcp family protein | TssD |
20 | PXO_02046 (evpB) | 3865269..3866765 [-], 1497 | 188577934 | EvpB protein | TssC |
21 | PXO_02045 (evpA) | 3866769..3867269 [-], 501 | 188577935 | EvpA protein | TssB |
22 | PXO_02044 | 3867316..3867804 [-], 489 | 188577936 | hypothetical protein | |
23 | PXO_02043 | 3868191..3868799 [+], 609 | 188577937 | lipoprotein | TssJ |
24 | PXO_02042 | 3868984..3870285 [+], 1302 | 188577938 | hypothetical protein | TssK |
25 | PXO_02041 | 3870285..3871073 [+], 789 | 188577939 | hypothetical protein | TssL |
26 | PXO_02040 | 3871084..3873627 [+], 2544 | 188577940 | Rhs element Vgr protein | TssI |
27 | PXO_02039 | 3873652..3876546 [+], 2895 | 188577941 | EF hand domain-containing protein | |
28 | PXO_02038 | 3877381..3878814 [+], 1434 | 188577942 | Rhs element Vgr protein | TssI |
29 | PXO_02037 | 3878818..3881073 [+], 2256 | 188577943 | hypothetical protein | |
30 | PXO_02036 | 3881635..3883398 [+], 1764 | 188577944 | Rhs element Vgr protein | TssI |
31 | PXO_02035 | 3883433..3883822 [-], 390 | 188577945 | Rhs element Vgr protein | |
32 | PXO_02034 | 3883803..3885965 [-], 2163 | 188577946 | hypothetical protein | |
33 | PXO_02033 | 3886034..3886582 [-], 549 | 188577947 | hypothetical protein | |
34 | PXO_02032 | 3886624..3887523 [-], 900 | 188577948 | hypothetical protein | |
35 | PXO_02031 | 3887592..3888101 [-], 510 | 188577949 | hypothetical protein | |
36 | PXO_02030 | 3888181..3889005 [-], 825 | 188577950 | hypothetical protein | |
37 | PXO_02029 | 3889002..3891788 [-], 2787 | 188577951 | Rhs element Vgr protein | TssI |
38 | PXO_02028 | 3891991..3892269 [-], 279 | 188577952 | hypothetical protein | |
39 | PXO_02027 | 3892440..3893297 [-], 858 | 188577953 | pirin | |
40 | PXO_02026 | 3893529..3895601 [+], 2073 | 188577954 | carbon starvation protein A | |
41 | PXO_02025 | 3895601..3895825 [+], 225 | 188577955 | hypothetical protein | |
42 | PXO_05696 | 3895856..3895969 [-], 114 | 188577956 | hypothetical protein | |
|
Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein