SecReT6
I. Summary
SecReT6 ID287 insolico
StrainXanthomonas oryzae pv. oryzae PXO99A
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_010717
Location3845766..3891788
Comment
FunctionN/A
T6SS TypeType i; subtype i4b
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111701111
ComponentTssGTssJTssKTssM
Number1110
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1PXO_020643841305..3842849 [+], 1545188577915type I restriction enzyme EcoKI M protein 
2PXO_020633842827..3844332 [+], 1506188577916type I restriction-modification system subunit S 
3PXO_020623844366..3844629 [-], 264188577917plasmid stabilization system 
4PXO_020613844681..3845022 [-], 342188577918hypothetical protein 
5PXO_020603845766..3846431 [+], 666188577919Rhs element Vgr protein  TssI
6PXO_020593846725..3847387 [-], 663188577920hypothetical protein 
7PXO_020583847757..3850255 [-], 2499188577921hypothetical protein 
8PXO_020573850257..3851000 [-], 744188577922hypothetical protein 
9PXO_020563851297..3854158 [-], 2862188577923hypothetical protein 
10PXO_020553854177..3854656 [-], 480188577924hypothetical protein 
11PXO_020543855024..3857573 [-], 2550188577925Rhs element Vgr protein  TssI
12PXO_020533857577..3857786 [-], 210188577926VGR-related protein  TssI
13PXO_020523857879..3858232 [-], 354188577927hypothetical protein 
14PXO_02051 (clpV)3858283..3861015 [-], 2733188577928type VI secretion ATPase, ClpV1 family  TssH
15PXO_020503861101..3862192 [-], 1092188577929hypothetical protein  TssG
16PXO_02049 (evpF)3862156..3863991 [-], 1836188577930EvpF protein  TssF
17PXO_020483863994..3864482 [-], 489188577931hypothetical protein  TssE
18PXO_056953864492..3864626 [-], 135188577932hypothetical protein 
19PXO_020473864630..3865127 [-], 498188577933Hcp family protein  TssD
20PXO_02046 (evpB)3865269..3866765 [-], 1497188577934EvpB protein  TssC
21PXO_02045 (evpA)3866769..3867269 [-], 501188577935EvpA protein  TssB
22PXO_020443867316..3867804 [-], 489188577936hypothetical protein 
23PXO_020433868191..3868799 [+], 609188577937lipoprotein  TssJ
24PXO_020423868984..3870285 [+], 1302188577938hypothetical protein  TssK
25PXO_020413870285..3871073 [+], 789188577939hypothetical protein  TssL
26PXO_020403871084..3873627 [+], 2544188577940Rhs element Vgr protein  TssI
27PXO_020393873652..3876546 [+], 2895188577941EF hand domain-containing protein 
28PXO_020383877381..3878814 [+], 1434188577942Rhs element Vgr protein  TssI
29PXO_020373878818..3881073 [+], 2256188577943hypothetical protein 
30PXO_020363881635..3883398 [+], 1764188577944Rhs element Vgr protein  TssI
31PXO_020353883433..3883822 [-], 390188577945Rhs element Vgr protein 
32PXO_020343883803..3885965 [-], 2163188577946hypothetical protein 
33PXO_020333886034..3886582 [-], 549188577947hypothetical protein 
34PXO_020323886624..3887523 [-], 900188577948hypothetical protein 
35PXO_020313887592..3888101 [-], 510188577949hypothetical protein 
36PXO_020303888181..3889005 [-], 825188577950hypothetical protein 
37PXO_020293889002..3891788 [-], 2787188577951Rhs element Vgr protein  TssI
38PXO_020283891991..3892269 [-], 279188577952hypothetical protein 
39PXO_020273892440..3893297 [-], 858188577953pirin 
40PXO_020263893529..3895601 [+], 2073188577954carbon starvation protein A 
41PXO_020253895601..3895825 [+], 225188577955hypothetical protein 
42PXO_056963895856..3895969 [-], 114188577956hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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