I. Summary
SecReT6 ID288 insolico
StrainBurkholderia multivorans ATCC 17616
Repliconchromosome I [Browse all T6SS(s) in this replicon]
T6SS TypeType i; subtype i4b
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1BMULJ_00298312322..313581 [-], 1260189349181ISBmu12d transposase 
2BMULJ_00299313951..314259 [+], 309189349182hypothetical protein 
3BMULJ_00300314346..315128 [-], 783189349183hypothetical protein  TssL
4BMULJ_00301315125..316471 [-], 1347189349184hypothetical protein  TssK
5BMULJ_00302316574..317185 [-], 612189349185putative lipoprotein  TssJ
6BMULJ_00303317561..318193 [+], 633189349186putative lipoprotein 
7BMULJ_00304318229..318744 [+], 516189349187hypothetical protein  TssB
8BMULJ_00305318760..320250 [+], 1491189349188hypothetical protein  TssC
9BMULJ_00306320322..320825 [+], 504189349189hypothetical protein  TssD
10BMULJ_00307320888..321373 [+], 486189349190hypothetical protein  TssE
11BMULJ_00308321452..323287 [+], 1836189349191hypothetical protein  TssF
12BMULJ_00309323251..324351 [+], 1101189349192hypothetical protein  TssG
13BMULJ_00310 (clpB)324396..327065 [+], 2670189349193protease associated ATPase  TssH
14BMULJ_00311327104..328225 [+], 1122189349194hypothetical protein  TssA
15BMULJ_00312328294..330855 [+], 2562189349195putative Rhs element Vgr protein  TssI
16BMULJ_00313330855..331895 [+], 1041189349196hypothetical protein 
17BMULJ_00314332140..332991 [+], 852189349197hypothetical protein 
18BMULJ_00315332984..335278 [+], 2295189349198hypothetical protein 
19BMULJ_00316335275..336939 [+], 1665189349199hypothetical protein 
20BMULJ_00317338215..338982 [+], 768189349200hypothetical protein 
21BMULJ_00318339436..340251 [+], 816189349201hypothetical protein 
22BMULJ_00319340655..341299 [+], 645189349202hypothetical protein 
23BMULJ_00320341444..341800 [+], 357189349203hypothetical protein 
24BMULJ_00321341869..342777 [+], 909189349204hypothetical protein 
25BMULJ_00322343208..343954 [+], 747189349205hypothetical protein 
26BMULJ_00323344046..344951 [+], 906189349206hypothetical protein 
27BMULJ_00324345127..346077 [-], 951189349207OOP family OmpA-OmpF porin  TagL
28BMULJ_00325346082..347071 [-], 990189349208hypothetical protein 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Homology Effector list

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1BMULJ_00306320322..320825 [+], 504189349189hypothetical protein BCAL0343

Download FASTA format files
Proteins        Genes