SecReT6
I. Summary
SecReT6 ID29 insolico
StrainYersinia pestis KIM10+
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_004088
Location44888..60608
Comment
FunctionN/A
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number010001111
ComponentTssGTssJTssKTssM
Number0000
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1y0025 (psiE)39981..40388 [+], 40822123946phosphate-starvation-inducible protein PsiE 
2y0026 (malG)40531..41442 [-], 91222123947maltose ABC transporter permease 
3y0027 (malF)41435..43027 [-], 159322123948maltose transporter membrane protein 
4y0028 (malE)43199..44410 [-], 121222123949maltose ABC transporter substrate-binding protein 
5y003044888..45250 [+], 36322123950hypothetical protein 
6y002944998..45234 [+], 23722123951hypothetical protein 
7y0031 (malK)45238..46347 [+], 111022123952maltose ABC transporter ATP-binding protein 
8y0032 (lamB)46418..47689 [+], 1272161484925maltoporin 
9y0033 (malM)47912..48841 [+], 93022123954maltose regulon periplasmic protein 
10y003449078..49236 [-], 15922123955hypothetical protein 
11y003549240..49590 [+], 35122123956hypothetical protein 
12y003649742..50260 [-], 51922123957hypothetical protein  TssD
13y003750781..51281 [+], 50122123958hypothetical protein  TssB
14y003851349..52830 [+], 148222123959hypothetical protein  TssC
15y003952837..53277 [+], 44122123960hypothetical protein  TssE
16y004053277..54503 [+], 122722123961hypothetical protein  TssF
17y004154393..54650 [-], 25822123962transposase 
18y004254689..55471 [-], 78322123963transposase/IS protein 
19y004355468..56490 [-], 102322123964transposase 
20y004456560..56985 [+], 42622123965transposase 
21y004557193..57432 [-], 24022123966hypothetical protein 
22y0046 (glpF)58060..58908 [+], 84922123967glycerol uptake facilitator protein 
23y0047 (glpK)59085..60608 [+], 152422123968glycerol kinase 
24y0048 (glpX)60845..61855 [+], 1011161484924fructose 1,6-bisphosphatase II 
25y0049 (fpr)62010..62756 [+], 74722123970ferredoxin-NADP reductase 
26y005063097..63597 [-], 50122123971hypothetical protein 
27y005163700..64314 [+], 61522123972hypothetical protein 
28y0052 (tpiA)64443..65210 [+], 76822123973triosephosphate isomerase 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
ECA2866

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1y003649742..50260 [-], 51922123957hypothetical protein ECA2866

Download FASTA format files
Proteins        Genes
N/A
(1) Boyer F et al. (2009). Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 10:104. [PudMed:19284603] in_silico
 
in_silico This literature contains bioinformatics investigation