I. Summary

SecReT6 ID	290
Strain	Rhizobium etli CIAT 652
Replicon	plasmid pB [Browse all T6SS(s) in this replicon]
Accession	NC_010996
Location	221483..245495
Comment
Function	N/A
T6SS Type	Type i; subtype i3
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	0	1	1	1	1	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	0	1	1

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	RHECIAT_PB0000204	216771..216932 [-], 162	190894171	hypothetical protein
2	RHECIAT_PB0000205	217317..217772 [+], 456	190894172	hypothetical protein
3	RHECIAT_PB0000206	218118..218525 [-], 408	190894173	hypothetical protein
4	RHECIAT_PB0000207	218677..218922 [-], 246	190894174	hypothetical protein
5	RHECIAT_PB0000208	218965..219270 [-], 306	190894175	hypothetical protein
6	RHECIAT_PB0000209	219796..220767 [-], 972	190894176	hypothetical protein
7	RHECIAT_PB0000210	221483..223510 [-], 2028	190894177	hypothetical protein	TssI
8	RHECIAT_PB0000211	224048..225241 [-], 1194	190894178	hypothetical protein	TssG
9	RHECIAT_PB0000212	225238..227124 [-], 1887	190894179	hypothetical protein	TssF
10	RHECIAT_PB0000213	227124..227627 [-], 504	190894180	hypothetical protein	TssE
11	RHECIAT_PB0000214	227714..228247 [-], 534	190894181	hypothetical protein	TssD
12	RHECIAT_PB0000215	228363..229850 [-], 1488	190894182	hypothetical protein	TssC
13	RHECIAT_PB0000216	229853..230407 [-], 555	190894183	hypothetical protein	TssB
14	RHECIAT_PB0000217	230443..231435 [-], 993	190894184	hypothetical protein	TssA
15	RHECIAT_PB0000218	232042..232428 [-], 387	190894185	hypothetical protein
16	RHECIAT_PB0000219	232663..233067 [+], 405	190894186	hypothetical protein
17	RHECIAT_PB0000220	233172..235451 [-], 2280	190894187	hypothetical protein
18	RHECIAT_PB0000221	235454..235999 [-], 546	190894188	hypothetical protein
19	RHECIAT_PB0000223	237798..238064 [-], 267	190894189	hypothetical protein
20	RHECIAT_PB0000224	238008..239363 [+], 1356	190894190	hypothetical protein	TssK
21	RHECIAT_PB0000225	239371..240591 [+], 1221	190894191	hypothetical protein	Fha
22	RHECIAT_PB0000226	240591..241880 [+], 1290	190894192	hypothetical protein	TssL
23	RHECIAT_PB0000227	241890..245495 [+], 3606	190894193	hypothetical protein	TssM
24	RHECIAT_PB0000228	245581..245769 [+], 189	190894194	hypothetical protein
25	RHECIAT_PB0000229	245792..247408 [+], 1617	190894195	hypothetical protein
26	RHECIAT_PB0000230	247504..247746 [+], 243	190894196	hypothetical protein
27	RHECIAT_PB0000232 (syrM)	249088..250098 [+], 1011	190894197	transcriptional regulator protein SyrM

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

Homology Effector list

RbsB

Effector identified
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Homolog
1	RHECIAT_CH0002495(rbsBch2)	2508726..2509655 [+], 930	190892083	ribose ABC transporter substrate-binding protein	RbsB

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Proteins        Genes

N/A

N/A