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III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | QU43_RS38180 | 358266..359024 [+], 759 | 493523029 | cytochrome c1 | |
2 | QU43_RS38185 | 359119..359730 [+], 612 | 493445191 | glutathione S-transferase N-terminal domain-containing protein | |
3 | QU43_RS38190 | 359802..360323 [+], 522 | 493531328 | ClpXP protease specificity-enhancing factor | |
4 | QU43_RS38200 | 360772..360975 [+], 204 | 493531325 | hypothetical protein | |
5 | QU43_RS38205 | 361085..361885 [-], 801 | 493531337 | transporter substrate-binding domain-containing protein | |
6 | QU43_RS38210 | 362167..362484 [+], 318 | 493531338 | hypothetical protein | |
7 | QU43_RS38215 | 362566..362901 [+], 336 | 493531334 | hypothetical protein | |
8 | QU43_RS38220 | 363015..363797 [-], 783 | 493537971 | type IVB secretion system protein IcmH/DotU | TssL |
9 | QU43_RS38225 (tssK) | 363794..365140 [-], 1347 | 493523019 | type VI secretion system baseplate subunit TssK | TssK |
10 | QU43_RS38230 (tssJ) | 365246..365845 [-], 600 | 493531335 | type VI secretion system lipoprotein TssJ | TssJ |
11 | QU43_RS38235 | 366232..366858 [+], 627 | 501468864 | hypothetical protein | |
12 | QU43_RS38240 (tssB) | 366905..367420 [+], 516 | 493530383 | type VI secretion system contractile sheath small subunit | TssB |
13 | QU43_RS38245 (tssC) | 367436..368926 [+], 1491 | 493530385 | type VI secretion system contractile sheath large subunit | TssC |
14 | QU43_RS38250 | 368997..369500 [+], 504 | 493523014 | type VI secretion system tube protein Hcp | TssD |
15 | QU43_RS38255 (tssE) | 369563..370048 [+], 486 | 493523013 | type VI secretion system baseplate subunit TssE | TssE |
16 | QU43_RS38260 (tssF) | 370125..371960 [+], 1836 | 493530384 | type VI secretion system baseplate subunit TssF | TssF |
17 | QU43_RS38265 (tssG) | 371924..373024 [+], 1101 | 493530382 | type VI secretion system baseplate subunit TssG | TssG |
18 | QU43_RS38270 (tssH) | 373066..375735 [+], 2670 | 493530380 | type VI secretion system ATPase TssH | TssH |
19 | QU43_RS38275 (tssA) | 375780..376901 [+], 1122 | 493530386 | type VI secretion system protein TssA | TssA |
20 | QU43_RS38280 | 376995..377945 [-], 951 | 493540541 | OmpA family protein | TagL |
21 | QU43_RS38285 (tagF) | 377950..378939 [-], 990 | 493529227 | type VI secretion system-associated protein TagF | |
22 | QU43_RS38290 (tssM) | 378936..382880 [-], 3945 | 501468865 | type VI secretion system membrane subunit TssM | TssM |
23 | QU43_RS38295 | 383182..384027 [-], 846 | 493535018 | M15 family metallopeptidase | |
24 | QU43_RS38300 | 384149..385141 [+], 993 | 501468866 | hypothetical protein | |
25 | QU43_RS38305 | 385353..386381 [+], 1029 | 493527894 | transporter | |
26 | QU43_RS73250 | 386409..386561 [-], 153 | 493527887 | DUF1427 family protein | |
27 | QU43_RS38310 | 386586..387563 [-], 978 | 501468867 | zinc-binding alcohol dehydrogenase family protein | |
|
Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein