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III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | SSPA2307 | 2569899..2572145 [-], 2247 | 197363515 | hypothetical protein | TssI |
2 | SSPA2308 | 2572177..2572638 [-], 462 | 197363516 | hypothetical protein | |
3 | SSPA2309 | 2572640..2573383 [-], 744 | 197363517 | hypothetical protein | |
4 | SSPA2310 | 2573468..2573929 [-], 462 | 197363518 | hypothetical protein | |
5 | SSPA2311 | 2573914..2574384 [-], 471 | 197363519 | hypothetical protein | |
6 | SSPA2312 | 2574488..2574961 [-], 474 | 197363520 | hypothetical protein | |
7 | SSPA2313 | 2575458..2576225 [-], 768 | 197363521 | hypothetical protein | |
8 | SSPA2314 | 2576225..2580085 [-], 3861 | 197363522 | inner membrane protein | TssM |
9 | SSPA2315 | 2580119..2580550 [-], 432 | 197363523 | shiga-like toxin A subunit | |
10 | SSPA2316 | 2580752..2581525 [-], 774 | 197363524 | hypothetical protein | |
11 | SSPA2317 | 2581530..2582834 [-], 1305 | 197363525 | hypothetical protein | TssL |
12 | SSPA2318 | 2582831..2584174 [-], 1344 | 197363526 | hypothetical protein | TssK |
13 | SSPA2319 | 2584178..2584714 [-], 537 | 197363527 | lipoprotein | TssJ |
14 | SSPA2320 | 2584782..2585267 [-], 486 | 197363528 | hypothetical protein | TssD |
15 | SSPA2321 | 2585410..2585793 [-], 384 | 197363529 | periplasmic protein | STM0278 (i) |
16 | SSPA2322 | 2585778..2586263 [-], 486 | 197363530 | cytoplasmic protein | STM0277 (e) |
17 | SSPA2323 | 2586374..2586490 [-], 117 | 197363531 | hypothetical protein | |
18 | SSPA2324 | 2586557..2587042 [-], 486 | 197363532 | hypothetical protein | TssD |
19 | SSPA2325 | 2587294..2587626 [-], 333 | 197363533 | cytoplasmic protein | |
20 | SSPA2326 | 2588206..2589714 [-], 1509 | 197363534 | hypothetical protein | TssC |
21 | SSPA2327 | 2589738..2590280 [-], 543 | 197363535 | hypothetical protein | TssB |
22 | SSPA2328 | 2590342..2590632 [-], 291 | 197363536 | hypothetical protein | |
23 | SSPA2329 | 2590635..2590733 [-], 99 | 197363537 | hypothetical protein | |
24 | SSPA2330 | 2590718..2593381 [-], 2664 | 197363538 | ClpB-like protein | TssH |
25 | SSPA2331 | 2594638..2595462 [+], 825 | 197363539 | hypothetical protein | TagJ |
26 | SSPA2332 | 2595459..2595953 [+], 495 | 197363540 | hypothetical protein | TssE |
27 | SSPA2333 | 2595969..2597852 [+], 1884 | 197363541 | hypothetical protein | TssF |
28 | SSPA2334 | 2597849..2598844 [+], 996 | 197363542 | hypothetical protein | TssG |
29 | SSPA2335 | 2598855..2599898 [+], 1044 | 197363543 | cytoplasmic protein | TssA |
30 | SSPA2336 | 2600429..2601160 [-], 732 | 197363544 | DNA polymerase III subunit epsilon | |
31 | SSPA2337 (rnhA) | 2601224..2601691 [+], 468 | 197363545 | ribonuclease H | |
32 | SSPA2338 | 2601688..2602410 [-], 723 | 197363546 | hypothetical protein | |
33 | SSPA2339 | 2602445..2603200 [+], 756 | 197363547 | hydroxyacylglutathione hydrolase | |
34 | SSPA2340 (mltD) | 2603272..2604639 [+], 1368 | 197363548 | membrane-bound lytic murein transglycosylase D | |
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Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein