I. Summary

SecReT6 ID	299
Strain	Vibrio fischeri MJ11
Replicon	chromosome I [Browse all T6SS(s) in this replicon]
Accession	NC_011184
Location	1127127..1145766
Comment
Function	N/A
T6SS Type	Type i; subtype i1
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	0	1	0	1	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	1

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	VFMJ11_1071	1122670..1123419 [+], 750	197336058	hypothetical protein
2	VFMJ11_1072	1123607..1125502 [+], 1896	197336023	sensory box/ggdef family protein
3	VFMJ11_1073	1125503..1126462 [-], 960	197335130	serine/threonine protein kinase
4	VFMJ11_1074	1126459..1127130 [-], 672	197335825	protein phosphatase 2C
5	VFMJ11_1075 (icmF_1)	1127127..1130648 [-], 3522	197336290	type VI secretion protein IcmF	TssM
6	VFMJ11_1076	1130659..1131492 [-], 834	197335286	hypothetical protein	TssL
7	VFMJ11_1077	1131494..1132816 [-], 1323	197334802	type VI secretion protein, family	TssK
8	VFMJ11_1078	1132828..1133319 [-], 492	197336156	type VI secretion lipoprotein, family	TssJ
9	VFMJ11_1079	1133356..1134666 [-], 1311	197335638	type VI secretion system FHA domain-containing protein	Fha
10	VFMJ11_1080	1134670..1134798 [-], 129	197335802	lipoprotein
11	VFMJ11_1081	1134801..1136369 [-], 1569	197335055	transcriptional regulator
12	VFMJ11_1082 (clpV_1)	1136375..1138957 [-], 2583	197334334	type VI secretion ATPase, ClpV1 family	TssH
13	VFMJ11_1083	1138954..1139994 [-], 1041	197336298	type VI secretion protein, family	TssG
14	VFMJ11_1084 (vasA_1)	1139958..1141709 [-], 1752	197334721	type VI secretion protein, family	TssF
15	VFMJ11_1085	1141706..1142131 [-], 426	197336369	type VI secretion system lysozyme-like protein	TssE
16	VFMJ11_1086	1142221..1143696 [-], 1476	197335473	type VI secretion protein, EvpB/family	TssC
17	VFMJ11_1087	1143700..1144200 [-], 501	197334873	type VI secretion protein, family	TssB
18	VFMJ11_1088	1144216..1145766 [-], 1551	197335960	type VI secretion-associated protein, family	TssA
19	VFMJ11_1089	1145989..1146195 [-], 207	197335198	hypothetical protein
20	VFMJ11_1090	1146188..1146739 [-], 552	197335016	primosomal replication protein N'
21	VFMJ11_1091	1146750..1147520 [-], 771	197334287	hypothetical protein
22	VFMJ11_1092 (dinG)	1147589..1149673 [-], 2085	197336182	ATP-dependent DNA helicase DinG

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

Homology Effector list

VEPGS_0021

Effector identified
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Homolog
1	VFMJ11_1495	1580072..1580590 [-], 519	197335173	BfdA	VEPGS_0021

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Proteins        Genes

N/A

N/A