I. Summary
SecReT6 ID30 insolico
StrainYersinia pestis KIM10+
Repliconchromosome [Browse all T6SS(s) in this replicon]
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1y0249264742..265245 [+], 50422124169inner membrane permease 
2y0250265407..266348 [-], 94222124170AraC family transcriptional regulator 
3y0251266543..267673 [+], 113122124171oxidoreductase 
4y0252267670..268569 [+], 90022124172hypothetical protein 
5y0253268784..268858 [+], 7522124173hypothetical protein 
6y0254268916..269710 [-], 79522124174hypothetical protein 
7y0255269719..274263 [-], 454522124175Rhs-like core protein  PAAR
8y0256274302..274724 [-], 42322124176hypothetical protein 
9y0257274727..276829 [-], 210322124177VgrG-like protein  TssI
10y0258276826..276924 [-], 9922124178hypothetical protein 
11y0259276946..277122 [-], 17722124179hypothetical protein 
12y0260277204..277692 [+], 48922124180transcriptional repressor 
13y0261277774..277998 [+], 22522124181hypothetical protein 
14y0262277977..278174 [-], 19822124182hypothetical protein 
15y0263278074..278265 [+], 19222124183hypothetical protein 
16y0264278315..278800 [-], 48622124184hypothetical protein 
17y0265278802..280172 [-], 137122124185rhsD protein 
18y0266280200..283091 [-], 289222124186Rhs-like protein  PAAR
19y0267283057..283515 [-], 45922124187hypothetical protein 
20y0268283521..285923 [-], 240322124188VgrG-like protein  TssI
21y0270287229..287591 [+], 36322124189hypothetical protein 
22y0272290946..292352 [-], 140722124190hypothetical protein  TssA
23y0273292340..293035 [-], 69622124191hypothetical protein 
24y0274293023..293820 [-], 79822124192hypothetical protein 
25y0275 (clpB)293817..296420 [-], 260422124193heat shock protein  TssH
26y0276296431..297198 [-], 76822124194hypothetical protein  TssL
27y0277297198..298544 [-], 134722124195hypothetical protein  TssK
28y0278298547..299092 [-], 54622124196hypothetical protein  TssJ
29y0279299092..300408 [-], 131722124197hypothetical protein  Fha
30y0280300534..301631 [-], 109822124198hypothetical protein  TssG
31y0281301586..302458 [-], 87322124199hypothetical protein  TssF
32y0282302218..302895 [+], 67822124200transposase 
33y0283302949..303569 [+], 62122124201transposase 
34y0284303596..304618 [+], 102322124202transposase 
35y0285304615..305397 [+], 78322124203transposase/IS protein 
36y0286305910..308024 [-], 211522124204secretion ATPase 
37y0287308017..309333 [-], 131722124205hypothetical protein 
38y0288309522..309761 [+], 24022124206hypothetical protein 
39y0289309936..310085 [+], 15022124207hypothetical protein 
40y0291310454..310975 [+], 522257168074hypothetical protein 
41y0292 (menG)311092..311577 [-], 48622124210ribonuclease activity regulator protein RraA 
42y0293 (menA)311719..312648 [-], 930221242111,4-dihydroxy-2-naphthoate octaprenyltransferase 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

(1) Boyer F et al. (2009). Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 10:104. [PudMed:19284603] in_silico
in_silico This literature contains bioinformatics investigation