I. Summary
SecReT6 ID300 insolico
StrainVibrio fischeri MJ11
Repliconchromosome II [Browse all T6SS(s) in this replicon]
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1VFMJ11_A0803874592..876883 [-], 2292197337550serine protease 
2VFMJ11_A0804877160..877762 [+], 603197336823lipoprotein, putative 
3VFMJ11_A0805877772..879226 [+], 1455197337793type VI secretion system FHA domain protein  Fha
4VFMJ11_A0806879228..879728 [+], 501197337278type VI secretion lipoprotein, family  TssJ
5VFMJ11_A0807879740..881065 [+], 1326197337818type VI secretion protein, family  TssK
6VFMJ11_A0808881062..881853 [+], 792197337045type IV / VI secretion system protein, DotU family  TssL
7VFMJ11_A0809881894..883405 [+], 1512197336690hypothetical protein  PAAR
8VFMJ11_A0810883408..884181 [+], 774197337184hypothetical protein 
9VFMJ11_A0811884191..884826 [+], 636197336896hypothetical protein 
10VFMJ11_A0812884836..885327 [+], 492197337494hypothetical protein 
11VFMJ11_A0813885351..885962 [+], 612197337132hypothetical protein 
12VFMJ11_A0814886052..896644 [-], 10593197337670lipoprotein, putative 
13VFMJ11_A0815896890..897819 [+], 930197337115M23 peptidase domain protein 
14VFMJ11_A0816898055..899359 [+], 1305197337689ImpA-related N-terminal family protein  TssA
15VFMJ11_A0817 (icmF_2)899394..902792 [+], 3399197336804type VI secretion protein IcmF  TssM
16VFMJ11_A0818902828..903277 [+], 450197337186transcriptional regulator 
17VFMJ11_A0819903349..904347 [-], 999197336905type VI secretion protein, family  TssG
18VFMJ11_A0820 (vasA_2)904344..906092 [-], 1749197337360type VI secretion protein, family  TssF
19VFMJ11_A0821906105..906515 [-], 411197337170type VI secretion system lysozyme-related protein  TssE
20VFMJ11_A0822906575..908053 [-], 1479197337884type VI secretion protein, EvpB/family  TssC
21VFMJ11_A0823908062..908571 [-], 510197337608type VI secretion protein, family  TssB
22VFMJ11_A0824908630..910189 [-], 1560197337659type VI secretion-associated protein, family  TssA
23VFMJ11_A0825910191..912176 [-], 1986197336793serine-threonine protein kinase 
24VFMJ11_A0826912330..913271 [-], 942197337337hypothetical protein 
25VFMJ11_A0827913271..914248 [-], 978197337887hypothetical protein 
26VFMJ11_A0828914229..915554 [-], 1326197337169hypothetical protein 
27VFMJ11_A0829915563..916057 [-], 495197337717hypothetical protein 
28VFMJ11_A0830916044..918122 [-], 2079197336955Rhs element Vgr family protein  TssI
29VFMJ11_A0831918192..918710 [-], 519197337277BfdA  TssD
30VFMJ11_A0832 (clpV_2)919176..921842 [+], 2667197336709type VI secretion ATPase, ClpV1 family  TssH
31VFMJ11_A0833921829..923439 [+], 1611197337394nitric oxide reductase regulator 
32VFMJ11_A0834923440..923940 [+], 501197336751lipoprotein, putative 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Homology Effector list
VEPGS_0021 , PSPTO_5435

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1VFMJ11_A0831918192..918710 [-], 519197337277BfdA VEPGS_0021
2VFMJ11_A10701186939..1187457 [-], 519197337584hemolysin co-regulated protein PSPTO_5435

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Proteins        Genes