 |
III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | SED_RS01760 (mltD) | 300759..302126 [-], 1368 | 446567360 | murein transglycosylase D | |
2 | SED_RS01765 (gloB) | 302198..302953 [-], 756 | 446975518 | hydroxyacylglutathione hydrolase | |
3 | SED_RS01770 | 302988..303710 [+], 723 | 446723917 | class I SAM-dependent methyltransferase | |
4 | SED_RS01775 (rnhA) | 303707..304174 [-], 468 | 446840616 | ribonuclease HI | |
5 | SED_RS01780 (dnaQ) | 304238..304969 [+], 732 | 487401775 | DNA polymerase III subunit epsilon | |
6 | SED_RS01790 | 305501..306556 [-], 1056 | 446289771 | ImpA family type VI secretion system protein | |
7 | SED_RS01795 (tssG) | 306567..307562 [-], 996 | 446067384 | type VI secretion system baseplate subunit TssG | |
8 | SED_RS01800 (tssF) | 307474..309396 [-], 1923 | 487407669 | type VI secretion system baseplate subunit TssF | |
9 | SED_RS01805 (tssE) | 309412..309906 [-], 495 | 446030152 | type VI secretion system baseplate subunit TssE | |
10 | SED_RS01810 | 309903..310727 [-], 825 | 446673202 | hypothetical protein | |
11 | SED_RS01815 (tagK) | 310714..311616 [-], 903 | 446729371 | type VI secretion system-associated protein TagK | |
12 | SED_RS01825 (tssH) | 311984..314623 [+], 2640 | 446371929 | type VI secretion system ATPase TssH | |
13 | SED_RS01830 (tssB) | 314723..315265 [+], 543 | 446919561 | type VI secretion system contractile sheath small subunit | |
14 | SED_RS01835 (tssC) | 315289..316797 [+], 1509 | 445936026 | type VI secretion system contractile sheath large subunit | |
15 | SED_RS26190 | 316864..317250 [+], 387 | 446245659 | BPSL0067 family protein | |
16 | SED_RS01845 | 317377..317709 [+], 333 | 501524592 | hypothetical protein | |
17 | SED_RS01850 | 317961..318446 [+], 486 | 446234937 | type VI secretion system tube protein Hcp | |
18 | SED_RS01855 (tssJ) | 318513..319049 [+], 537 | 446929847 | type VI secretion system lipoprotein TssJ | |
19 | SED_RS01860 (tssK) | 319053..320396 [+], 1344 | 446040877 | type VI secretion system baseplate subunit TssK | |
20 | SED_RS01865 (tssL) | 320393..321697 [+], 1305 | 446054631 | type VI secretion system protein TssL, long form | |
21 | SED_RS01870 | 321702..322475 [+], 774 | 446899299 | hypothetical protein | |
22 | SED_RS01875 | 322678..323109 [+], 432 | 1149979959 | Shiga toxin A subunit | |
23 | SED_RS01880 (tssM) | 323143..327012 [+], 3870 | 447091711 | type VI secretion system membrane subunit TssM | |
24 | SED_RS01885 | 327012..327800 [+], 789 | 447176872 | DUF2094 domain-containing protein | |
25 | SED_RS01890 | 327797..328213 [+], 417 | 446682296 | DUF2195 family protein | |
26 | SED_RS01895 | 328237..328758 [+], 522 | 446891128 | DUF2778 domain-containing protein | |
27 | SED_RS01900 | 329155..331344 [+], 2190 | 445933675 | type VI secretion system tip protein VgrG | |
28 | SED_RS01905 | 331368..331814 [+], 447 | 446297979 | DcrB-related protein | |
29 | SED_RS01910 | 331833..335584 [+], 3752 | pseudogene | PAAR domain-containing protein | |
30 | SED_RS24315 | 335568..335909 [+], 342 | 487660856 | hypothetical protein | |
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Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein