 |
III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | SG_RS05180 | 1109709..1110815 [+], 1107 | pseudogene | Gfo/Idh/MocA family oxidoreductase | |
2 | SG_RS05185 | 1110982..1111275 [-], 294 | 446036546 | hypothetical protein | |
3 | SG_RS05190 | 1111306..1111524 [+], 219 | 446803361 | hypothetical protein | |
4 | SG_RS05200 | 1112125..1112583 [-], 459 | 446546026 | DUF1311 domain-containing protein | |
5 | SG_RS05205 | 1112707..1113078 [-], 372 | 447150137 | hypothetical protein | |
6 | SG_RS22830 | 1113087..1113530 [-], 444 | 1102634496 | hypothetical protein | |
7 | SG_RS05210 | 1113546..1114418 [-], 873 | 446170355 | LysM peptidoglycan-binding domain-containing protein | |
8 | SG_RS05215 | 1114451..1114930 [-], 480 | 447207708 | Hcp family type VI secretion system effector | |
9 | SG_RS05220 | 1114918..1116321 [-], 1404 | 445998214 | type VI secretion system ImpA family N-terminal domain-containing protein | |
10 | SG_RS05225 (tssM) | 1116332..1119793 [-], 3462 | 447059852 | type VI secretion system membrane subunit TssM | |
11 | SG_RS05230 (tssA) | 1119872..1121284 [-], 1413 | pseudogene | type VI secretion system protein TssA | |
12 | SG_RS05235 (tagO) | 1121286..1122023 [-], 738 | 446011293 | type VI secretion system-associated protein TagO | |
13 | SG_RS05240 | 1122020..1124683 [-], 2664 | 446536954 | AAA family ATPase | |
14 | SG_RS05245 | 1124696..1125454 [-], 759 | 446266123 | type IVB secretion system protein IcmH/DotU | |
15 | SG_RS05250 (tssK) | 1125459..1126790 [-], 1332 | 446168599 | type VI secretion system baseplate subunit TssK | |
16 | SG_RS05255 (tssJ) | 1126793..1127296 [-], 504 | 1524033542 | type VI secretion system lipoprotein TssJ | |
17 | SG_RS05260 (tagH) | 1127323..1128609 [-], 1287 | 446719629 | type VI secretion system-associated FHA domain protein TagH | |
18 | SG_RS05265 (tssG) | 1128634..1129722 [-], 1089 | 446431194 | type VI secretion system baseplate subunit TssG | |
19 | SG_RS05270 (tssF) | 1129686..1131539 [-], 1854 | 446316014 | type VI secretion system baseplate subunit TssF | |
20 | SG_RS05275 (tssE) | 1131544..1131960 [-], 417 | 446534352 | type VI secretion system baseplate subunit TssE | |
21 | SG_RS05280 (tssC) | 1131957..1133429 [-], 1473 | 445980146 | type VI secretion system contractile sheath large subunit | |
22 | SG_RS05290 (tssB) | 1133720..1134223 [-], 504 | 445953397 | type VI secretion system contractile sheath small subunit | |
23 | SG_RS05300 | 1134853..1135371 [+], 519 | 447065710 | Hcp family type VI secretion system effector | |
24 | SG_RS05305 | 1135593..1137704 [+], 2112 | 446025594 | type VI secretion system tip protein VgrG | |
25 | SG_RS05310 | 1137806..1141606 [+], 3801 | pseudogene | RHS repeat protein | |
26 | SG_RS24050 | 1141623..1142204 [+], 582 | 487407310 | hypothetical protein | |
27 | SG_RS05320 | 1142197..1142601 [+], 405 | 446545186 | hypothetical protein | |
|
Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein