SecReT6
I. Summary
SecReT6 ID307 insolico
StrainAliivibrio salmonicida LFI1238
Repliconchromosome I [Browse all T6SS(s) in this replicon]
AccessionNC_011312
Location1213243..1226746
Comment
FunctionN/A
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number101011111
ComponentTssGTssJTssKTssM
Number1110
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1VSAL_I1112 (vasL)1209043..1209696 [-], 654209694665serine/threonine phosphoprotein phosphatase 
2VSAL_I1114 (vasF)1213243..1214070 [-], 828209694666type VI secretion protein VasF  TssL
3VSAL_I1115 (vasE)1214072..1215394 [-], 1323209694667type VI secretion protein VasE  TssK
4VSAL_I1116 (vasD)1215406..1215894 [-], 489209694668type VI secretion protein VasD  TssJ
5VSAL_I1117 (vasC)1215928..1217289 [-], 1362209694669type VI secretion protein VasC  Fha
6VSAL_I1119 (vasG)1218905..1221523 [-], 2619209694670chaperone ClpB  TssH
7VSAL_I1120 (vasG)1221520..1222449 [-], 930209694671type VI secretion protein VasG  TssG
8VSAL_I1121 (vasA)1222512..1224263 [-], 1752209694672type VI secretion protein VasA  TssF
9VSAL_I1122 (vasS)1224260..1224685 [-], 426209694673type VI secretion protein VasS  TssE
10VSAL_I1123 (vasR)1224773..1226248 [-], 1476209694674type VI secretion protein VasR  TssC
11VSAL_I1124 (vasQ)1226252..1226746 [-], 495209694675type VI secretion protein VasQ  TssB
12VSAL_I1125 (vasJ)1226761..1228302 [-], 1542209694676type VI secretion protein VasJ  TssA
13VSAL_I11261228554..1228763 [-], 210209694677hypothetical protein 
14VSAL_I11271228750..1229310 [-], 561209694678primosomal replication protein N'' 
15VSAL_I11281229341..1230111 [-], 771209694679membrane protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
VEPGS_0021

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1VSAL_p840_35(hcp)35695..36213 [+], 519215778385secreted protein Hcp-2 (haemolysin co-regulated protein) VEPGS_0021

Download FASTA format files
Proteins        Genes
N/A
N/A