I. Summary

SecReT6 ID	308
Strain	Aliivibrio salmonicida LFI1238
Replicon	chromosome I [Browse all T6SS(s) in this replicon]
Accession	NC_011312
Location	1272880..1288232
Comment
Function	N/A
T6SS Type	Type i; subtype i5
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	1	0	1	1	2	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	0

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	VSAL_I1166	1270324..1271517 [-], 1194	209694714	transposase
2	VSAL_I1168 (vasV-1)	1272188..1272484 [+], 297	209694715	type VI secretion protein VasV-1, PAAR domain protein	PAAR
3	VSAL_I1169 (vasJ-1)	1272880..1274265 [+], 1386	209694716	type VI secretion protein VasJ-1	TssA
4	VSAL_I1170 (hcp-3)	1274426..1274818 [+], 393	209694717	hemolysin-coregulated protein Hcp-3	TssD
5	VSAL_I1171 (vasQ-1)	1274890..1275399 [+], 510	209694718	type VI secretion protein VasQ-1	TssB
6	VSAL_I1172 (vasRA-1)	1275399..1276880 [+], 1482	209694719	type VI secretion protein VasRA-1	TssC
7	VSAL_I1173 (vasRB-1)	1276930..1278291 [+], 1362	209694720	type VI secretion protein VasRB-1	TssC
8	VSAL_I1174 (vasS-1)	1278288..1278710 [+], 423	209694721	type VI secretion protein VasS-1	TssE
9	VSAL_I1175 (vasA-1)	1278703..1280484 [+], 1782	209694722	type VI secretion protein VasA-1	TssF
10	VSAL_I1176 (vasB-1)	1280466..1281449 [+], 984	209694723	type VI secretion protein VasB-1	TssG
11	VSAL_I1177 (vasG-1)	1281456..1284074 [+], 2619	209694724	chaperone ClpB-1	TssH
12	VSAL_I1178 (vasV-1)	1284155..1284313 [+], 159	209694725	type VI secretion protein VasV-1
13	VSAL_I1179 (vasC-1)	1284376..1285320 [+], 945	209694726	type VI secretion protein VasC-1	Fha
14	VSAL_I1180 (vasD-1)	1285317..1285781 [+], 465	209694727	type VI secretion protein VasD-1	TssJ
15	VSAL_I1181 (vasE-1)	1285784..1287100 [+], 1317	209694728	type VI secretion protein VasE-1	TssK
16	VSAL_I1182 (vasF-1)	1287108..1288232 [+], 1125	209694729	type VI secretion protein VasF-1	TssL
17	VSAL_I1184	1290747..1292054 [+], 1308	209694730	transposase

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

Homology Effector list

VEPGS_0021 , VEPGS_0021

Effector identified
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Homolog
1	VSAL_I1202(hcp)	1311319..1311840 [+], 522	209694748	secreted protein Hcp-1	VEPGS_0021
2	VSAL_I1357(hpc)	1475219..1475737 [+], 519	209694886	secreted protein Hcp-2 (haemolysin co-regulated protein)	VEPGS_0021

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Proteins        Genes

N/A

N/A