SecReT6
I. Summary
SecReT6 ID308 insolico
StrainAliivibrio salmonicida LFI1238
Repliconchromosome I [Browse all T6SS(s) in this replicon]
AccessionNC_011312
Location1272880..1288232
Comment
FunctionN/A
T6SS TypeType i; subtype i5
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111011211
ComponentTssGTssJTssKTssM
Number1110
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1VSAL_I11661270324..1271517 [-], 1194209694714transposase 
2VSAL_I1168 (vasV-1)1272188..1272484 [+], 297209694715type VI secretion protein VasV-1, PAAR domain protein  PAAR
3VSAL_I1169 (vasJ-1)1272880..1274265 [+], 1386209694716type VI secretion protein VasJ-1  TssA
4VSAL_I1170 (hcp-3)1274426..1274818 [+], 393209694717hemolysin-coregulated protein Hcp-3  TssD
5VSAL_I1171 (vasQ-1)1274890..1275399 [+], 510209694718type VI secretion protein VasQ-1  TssB
6VSAL_I1172 (vasRA-1)1275399..1276880 [+], 1482209694719type VI secretion protein VasRA-1  TssC
7VSAL_I1173 (vasRB-1)1276930..1278291 [+], 1362209694720type VI secretion protein VasRB-1  TssC
8VSAL_I1174 (vasS-1)1278288..1278710 [+], 423209694721type VI secretion protein VasS-1  TssE
9VSAL_I1175 (vasA-1)1278703..1280484 [+], 1782209694722type VI secretion protein VasA-1  TssF
10VSAL_I1176 (vasB-1)1280466..1281449 [+], 984209694723type VI secretion protein VasB-1  TssG
11VSAL_I1177 (vasG-1)1281456..1284074 [+], 2619209694724chaperone ClpB-1  TssH
12VSAL_I1178 (vasV-1)1284155..1284313 [+], 159209694725type VI secretion protein VasV-1 
13VSAL_I1179 (vasC-1)1284376..1285320 [+], 945209694726type VI secretion protein VasC-1  Fha
14VSAL_I1180 (vasD-1)1285317..1285781 [+], 465209694727type VI secretion protein VasD-1  TssJ
15VSAL_I1181 (vasE-1)1285784..1287100 [+], 1317209694728type VI secretion protein VasE-1  TssK
16VSAL_I1182 (vasF-1)1287108..1288232 [+], 1125209694729type VI secretion protein VasF-1  TssL
17VSAL_I11841290747..1292054 [+], 1308209694730transposase 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
VEPGS_0021 , VEPGS_0021

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1VSAL_I1202(hcp)1311319..1311840 [+], 522209694748secreted protein Hcp-1 VEPGS_0021
2VSAL_I1357(hpc)1475219..1475737 [+], 519209694886secreted protein Hcp-2 (haemolysin co-regulated protein) VEPGS_0021

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Proteins        Genes
N/A
N/A