I. Summary
Component | TssH | TssD | TssL | TssI | TssA | TssB | TssC | TssE | TssF |
Number | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 1 | 1 |
Component | TssG | TssJ | TssK | TssM |
Number | 1 | 1 | 1 | 0 |
 |
III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | ECH74115_0225 (rnhA) | 239068..239535 [-], 468 | 209396174 | ribonuclease H | |
2 | ECH74115_0227 (dnaQ) | 239600..240331 [+], 732 | 209400894 | DNA polymerase III subunit epsilon | |
3 | ECH74115_0229 | 240869..241669 [+], 801 | 209399184 | hypothetical protein | |
4 | ECH74115_0230 | 241854..242003 [-], 150 | 209398597 | hypothetical protein | |
5 | ECH74115_0233 | 243962..245371 [-], 1410 | 209395773 | ImpA domain-containing protein | TssA |
6 | ECH74115_0235 | 248953..250365 [-], 1413 | 209399715 | ImpA domain-containing protein | TssA |
7 | ECH74115_0236 | 250370..251113 [-], 744 | 209400989 | type VI secretion-associated protein | |
8 | ECH74115_0237 (clpV) | 251110..253881 [-], 2772 | 209397886 | type VI secretion ATPase, ClpV1 family | TssH |
9 | ECH74115_0238 | 253890..254651 [-], 762 | 209395897 | hypothetical protein | TssL |
10 | ECH74115_0239 | 254656..255987 [-], 1332 | 209398751 | hypothetical protein | TssK |
11 | ECH74115_0240 | 255990..256514 [-], 525 | 209399492 | type VI secretion lipoprotein | TssJ |
12 | ECH74115_0241 | 256511..257791 [-], 1281 | 209400996 | hypothetical protein | Fha |
13 | ECH74115_0242 | 257816..258898 [-], 1083 | 209398878 | hypothetical protein | TssG |
14 | ECH74115_0243 | 258862..260712 [-], 1851 | 209396969 | hypothetical protein | TssF |
15 | ECH74115_0244 | 260716..261129 [-], 414 | 209399977 | hypothetical protein | TssE |
16 | ECH74115_0246 | 262662..262886 [-], 225 | 209395714 | hypothetical protein | TssC |
17 | ECH74115_0247 | 262921..263421 [-], 501 | 209397057 | hypothetical protein | TssB |
18 | ECH74115_0248 | 263848..263991 [+], 144 | 209397620 | hypothetical protein | |
19 | ECH74115_0249 | 264118..264636 [+], 519 | 209398721 | hypothetical protein | TssD |
20 | ECH74115_0250 | 264669..264806 [+], 138 | 209399507 | hypothetical protein | |
21 | ECH74115_0251 | 264846..266987 [+], 2142 | 209399534 | ImpA family type VI secretion-associated protein | TssI |
22 | ECH74115_0252 | 267063..271295 [+], 4233 | 209400273 | RHS Repeat family protein | PAAR |
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Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein
V. Investigation of the genomic context of the T6SS gene cluster.