SecReT6
I. Summary
SecReT6 ID311 insolico
StrainAcinetobacter baumannii AB0057
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_011586
Location1559693..1579099
Comment
FunctionN/A
T6SS TypeType i; subtype i4b
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111011111
ComponentTssGTssJTssKTssM
Number1011
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1AB57_RS075651555328..1556209 [-], 882446922832ABC transporter ATP-binding protein 
2AB57_RS075701556209..1557153 [-], 945446464677ABC transporter permease 
3AB57_RS075751557249..1557650 [-], 402445965495hypothetical protein 
4AB57_RS075851558777..1559430 [+], 654487944227hypothetical protein 
5AB57_RS07590 (tssB)1559447..1559950 [+], 504447041786type VI secretion system contractile sheath small subunit  TssB
6AB57_RS07595 (tssC)1559943..1561424 [+], 1482446989267type VI secretion system contractile sheath large subunit  TssC
7AB57_RS076001561474..1561977 [+], 504446575849type VI secretion system tube protein Hcp  TssD
8AB57_RS07605 (tssE)1562057..1562533 [+], 477446969775type VI secretion system baseplate subunit TssE  TssE
9AB57_RS07610 (tssF)1562550..1564361 [+], 1812446490968type VI secretion system baseplate subunit TssF  TssF
10AB57_RS07615 (tssG)1564325..1565323 [+], 999447113140type VI secretion system baseplate subunit TssG  TssG
11AB57_RS076201565320..1566732 [+], 1413446514525hypothetical protein 
12AB57_RS07625 (tssM)1566763..1570587 [+], 3825446479067type VI secretion system membrane subunit TssM  TssM
13AB57_RS07630 (tagF)1570625..1571584 [+], 960446479387type VI secretion system-associated protein TagF 
14AB57_RS076351571587..1572354 [+], 768446995154OmpA family protein 
15AB57_RS076401572371..1572634 [+], 264446090257PAAR domain-containing protein 
16AB57_RS07645 (tssH)1572853..1575534 [+], 2682446910578type VI secretion system ATPase TssH  TssH
17AB57_RS07650 (tssA)1575558..1576652 [+], 1095445942858type VI secretion system protein TssA  TssA
18AB57_RS07655 (tssK)1576669..1578033 [+], 1365446393589type VI secretion system baseplate subunit TssK  TssK
19AB57_RS076601578051..1578857 [+], 807446005774type IVB secretion system protein IcmH/DotU  TssL
20AB57_RS076651578870..1579472 [+], 603445968591hypothetical protein 
21AB57_RS076701579480..1580433 [+], 954446895327M15 family metallopeptidase 
22AB57_RS076751580436..1581287 [-], 852446382337LysR family transcriptional regulator 
23AB57_RS076801581460..1582107 [+], 6481190343326ankyrin repeat domain-containing protein 
24AB57_RS076851582123..1582605 [+], 483446569388nucleoside deaminase 
25AB57_RS076901582605..1583783 [+], 1179446736569cyanate transporter 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
A1S_1296

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog

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Proteins        Genes
N/A
N/A