I. Summary
SecReT6 ID312 insolico
StrainAcinetobacter baumannii AB307-0294
Repliconchromosome [Browse all T6SS(s) in this replicon]
T6SS TypeType i; subtype i4b
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1ABBFA_0022192362265..2363443 [-], 1179215483896Cyanate transport protein cynX 
2ABBFA_0022202363443..2363925 [-], 483215483897guanine deaminase(guanase) 
3ABBFA_0022212363941..2364609 [-], 669215483898Ankyrin repeat family protein 
4ABBFA_0022222364761..2365612 [+], 852215483899regulatory helix-turn-helix protein, lysR family protein 
5ABBFA_0022232365615..2366343 [-], 729215483900L-alanyl-D-glutamate peptidase 
6ABBFA_0022242366577..2366975 [-], 399215483901hypothetical protein 
7ABBFA_0022252367193..2367999 [-], 807215483902hypothetical protein  TssL
8ABBFA_0022262368017..2369381 [-], 1365215483903hypothetical protein  TssK
9ABBFA_0022272369398..2370492 [-], 1095215483904ImpA-related N-terminal family protein  TssA
10ABBFA_002228 (clpV)2370516..2373197 [-], 2682215483905type VI secretion ATPase, ClpV1 family  TssH
11ABBFA_0022292373416..2373679 [-], 264215483906PAAR motif family protein  PAAR
12ABBFA_0022302373696..2374463 [-], 768215483907inner membrane lipoprotein yiaD precursor  TagL
13ABBFA_0022312374466..2375425 [-], 960215483908hypothetical protein 
14ABBFA_0022322375463..2379287 [-], 3825215483909ImcF-related family protein  TssM
15ABBFA_0022332379318..2380730 [-], 1413215483910hypothetical protein 
16ABBFA_0022342380727..2381725 [-], 999215483911hypothetical protein  TssG
17ABBFA_0022352381689..2383500 [-], 1812215483912hypothetical protein  TssF
18ABBFA_0022362383517..2383993 [-], 477215483913lysozyme  TssE
19ABBFA_0022372384073..2384576 [-], 504215483914type VI secretion system effector, Hcp1 family protein  TssD
20ABBFA_0022382384626..2386107 [-], 1482215483915hypothetical protein  TssC
21ABBFA_0022392386100..2386603 [-], 504215483916hypothetical protein  TssB
22ABBFA_0022402386620..2387312 [-], 693215483917hypothetical protein 
23ABBFA_0022412388401..2388802 [+], 402215483918hypothetical protein 
24ABBFA_0022422388824..2388940 [+], 117215483919hypothetical protein 
25ABBFA_0022432388898..2389842 [+], 945215483920Taurine transport system permease protein tauC 
26ABBFA_0022442389842..2390723 [+], 882215483921nitrate transport ATP-binding protein nrtD 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Homology Effector list
ABBFA_000117 , A1S_1296, ABBFA_002275, ABBFA_002468

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1ABBFA_000117131981..133729 [+], 1749215481876LysM domain protein ABBFA_000117
2ABBFA_0022372384073..2384576 [-], 504215483914type VI secretion system effector, Hcp1 family protein A1S_1296
3ABBFA_0022752420733..2425604 [-], 4872215483952core protein ABBFA_002275
4ABBFA_0024682627614..2632386 [-], 4773215484143protein rhsD precursor ABBFA_002468
Data from experimental literature

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Proteins        Genes

Homology Immunity protein list
ABBFA_00114, ABBFA_02242, ABBFA_02438

Immunity protein identified
#Locus tag(Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog

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Proteins        Genes