I. Summary

SecReT6 ID	312
Strain	Acinetobacter baumannii AB307-0294
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_011595
Location	2367193..2386603
Comment
Function	N/A
T6SS Type	Type i; subtype i4b
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	1	0	1	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	0	1	1

11

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	ABBFA_002219	2362265..2363443 [-], 1179	215483896	Cyanate transport protein cynX
2	ABBFA_002220	2363443..2363925 [-], 483	215483897	guanine deaminase(guanase)
3	ABBFA_002221	2363941..2364609 [-], 669	215483898	Ankyrin repeat family protein
4	ABBFA_002222	2364761..2365612 [+], 852	215483899	regulatory helix-turn-helix protein, lysR family protein
5	ABBFA_002223	2365615..2366343 [-], 729	215483900	L-alanyl-D-glutamate peptidase
6	ABBFA_002224	2366577..2366975 [-], 399	215483901	hypothetical protein
7	ABBFA_002225	2367193..2367999 [-], 807	215483902	hypothetical protein	TssL
8	ABBFA_002226	2368017..2369381 [-], 1365	215483903	hypothetical protein	TssK
9	ABBFA_002227	2369398..2370492 [-], 1095	215483904	ImpA-related N-terminal family protein	TssA
10	ABBFA_002228 (clpV)	2370516..2373197 [-], 2682	215483905	type VI secretion ATPase, ClpV1 family	TssH
11	ABBFA_002229	2373416..2373679 [-], 264	215483906	PAAR motif family protein	PAAR
12	ABBFA_002230	2373696..2374463 [-], 768	215483907	inner membrane lipoprotein yiaD precursor	TagL
13	ABBFA_002231	2374466..2375425 [-], 960	215483908	hypothetical protein
14	ABBFA_002232	2375463..2379287 [-], 3825	215483909	ImcF-related family protein	TssM
15	ABBFA_002233	2379318..2380730 [-], 1413	215483910	hypothetical protein
16	ABBFA_002234	2380727..2381725 [-], 999	215483911	hypothetical protein	TssG
17	ABBFA_002235	2381689..2383500 [-], 1812	215483912	hypothetical protein	TssF
18	ABBFA_002236	2383517..2383993 [-], 477	215483913	lysozyme	TssE
19	ABBFA_002237	2384073..2384576 [-], 504	215483914	type VI secretion system effector, Hcp1 family protein	TssD
20	ABBFA_002238	2384626..2386107 [-], 1482	215483915	hypothetical protein	TssC
21	ABBFA_002239	2386100..2386603 [-], 504	215483916	hypothetical protein	TssB
22	ABBFA_002240	2386620..2387312 [-], 693	215483917	hypothetical protein
23	ABBFA_002241	2388401..2388802 [+], 402	215483918	hypothetical protein
24	ABBFA_002242	2388824..2388940 [+], 117	215483919	hypothetical protein
25	ABBFA_002243	2388898..2389842 [+], 945	215483920	Taurine transport system permease protein tauC
26	ABBFA_002244	2389842..2390723 [+], 882	215483921	nitrate transport ATP-binding protein nrtD

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

Homology Effector list

ABBFA_000117 , A1S_1296, ABBFA_002275, ABBFA_002468

Effector identified
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Homolog
1	ABBFA_000117	131981..133729 [+], 1749	215481876	LysM domain protein	ABBFA_000117
2	ABBFA_002237	2384073..2384576 [-], 504	215483914	type VI secretion system effector, Hcp1 family protein	A1S_1296
3	ABBFA_002275	2420733..2425604 [-], 4872	215483952	core protein	ABBFA_002275
4	ABBFA_002468	2627614..2632386 [-], 4773	215484143	protein rhsD precursor	ABBFA_002468
Data from experimental literature

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Proteins        Genes

Homology Immunity protein list

ABBFA_00114, ABBFA_02242, ABBFA_02438

Immunity protein identified
#	Locus tag(Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Homolog

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Proteins        Genes

N/A