I. Summary
SecReT6 ID314 insolico
StrainEscherichia fergusonii ATCC 35469
Repliconchromosome [Browse all T6SS(s) in this replicon]
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1EFER_19562004648..2004971 [+], 324218549294phage integrase 
2EFER_19572005212..2005358 [-], 147218549295hypothetical protein 
3EFER_19582005536..2005895 [-], 360218549296hypothetical protein 
4EFER_19592005907..2006371 [-], 465218549297hypothetical protein 
5EFER_19602007155..2007604 [-], 450218549298hypothetical protein 
6EFER_19612007604..2008275 [-], 672218549299hypothetical protein 
7EFER_19622008475..2008954 [-], 480218549300hypothetical protein  TssD
8EFER_19632008972..2010477 [-], 1506218549301hypothetical protein  TssA
9EFER_19642010341..2013862 [-], 3522218549302IcmF-like protein  TssM
10EFER_19652013881..2015314 [-], 1434218549303hypothetical protein  TssA
11EFER_19662015317..2016060 [-], 744218549304hypothetical protein 
12EFER_19672016057..2018783 [-], 2727218549305ATP-dependent Clp proteinase Aec27 ATP-binding chain, with chaperone activity  TssH
13EFER_19682018792..2019601 [-], 810218549306membrane protein Aec26  TssL
14EFER_19692019594..2021051 [-], 1458218549307hypothetical protein  TssK
15EFER_19702020952..2021485 [-], 534218549308hypothetical protein  TssJ
16EFER_19712021482..2022762 [-], 1281218549309hypothetical protein  Fha
17EFER_19722022786..2023823 [-], 1038218549310hypothetical protein  TssG
18EFER_19732023787..2025619 [-], 1833218549311hypothetical protein  TssF
19EFER_19742025625..2026062 [-], 438218549312hypothetical protein  TssE
20EFER_19752026065..2027546 [-], 1482218549313hypothetical protein  TssC
21EFER_19762027561..2028160 [-], 600218549314hypothetical protein  TssB
22EFER_19772028690..2029271 [+], 582218549315hypothetical protein  TssD
23EFER_19782029481..2031427 [+], 1947218549316hypothetical protein  TssI
24EFER_19792031449..2031868 [+], 420218549317hypothetical protein 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Homology Effector list

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1EFER_19772028690..2029271 [+], 582218549315hypothetical protein ABG57132

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Proteins        Genes