I. Summary

SecReT6 ID	314
Strain	Escherichia fergusonii ATCC 35469
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_011740
Location	2008475..2031427
Comment
Function	N/A
T6SS Type	Type i; subtype i1
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	2	1	1	2	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	1

15

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	EFER_1956	2004648..2004971 [+], 324	218549294	phage integrase
2	EFER_1957	2005212..2005358 [-], 147	218549295	hypothetical protein
3	EFER_1958	2005536..2005895 [-], 360	218549296	hypothetical protein
4	EFER_1959	2005907..2006371 [-], 465	218549297	hypothetical protein
5	EFER_1960	2007155..2007604 [-], 450	218549298	hypothetical protein
6	EFER_1961	2007604..2008275 [-], 672	218549299	hypothetical protein
7	EFER_1962	2008475..2008954 [-], 480	218549300	hypothetical protein	TssD
8	EFER_1963	2008972..2010477 [-], 1506	218549301	hypothetical protein	TssA
9	EFER_1964	2010341..2013862 [-], 3522	218549302	IcmF-like protein	TssM
10	EFER_1965	2013881..2015314 [-], 1434	218549303	hypothetical protein	TssA
11	EFER_1966	2015317..2016060 [-], 744	218549304	hypothetical protein
12	EFER_1967	2016057..2018783 [-], 2727	218549305	ATP-dependent Clp proteinase Aec27 ATP-binding chain, with chaperone activity	TssH
13	EFER_1968	2018792..2019601 [-], 810	218549306	membrane protein Aec26	TssL
14	EFER_1969	2019594..2021051 [-], 1458	218549307	hypothetical protein	TssK
15	EFER_1970	2020952..2021485 [-], 534	218549308	hypothetical protein	TssJ
16	EFER_1971	2021482..2022762 [-], 1281	218549309	hypothetical protein	Fha
17	EFER_1972	2022786..2023823 [-], 1038	218549310	hypothetical protein	TssG
18	EFER_1973	2023787..2025619 [-], 1833	218549311	hypothetical protein	TssF
19	EFER_1974	2025625..2026062 [-], 438	218549312	hypothetical protein	TssE
20	EFER_1975	2026065..2027546 [-], 1482	218549313	hypothetical protein	TssC
21	EFER_1976	2027561..2028160 [-], 600	218549314	hypothetical protein	TssB
22	EFER_1977	2028690..2029271 [+], 582	218549315	hypothetical protein	TssD
23	EFER_1978	2029481..2031427 [+], 1947	218549316	hypothetical protein	TssI
24	EFER_1979	2031449..2031868 [+], 420	218549317	hypothetical protein

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files

Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

Homology Effector list

ABG57132

Effector identified
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Homolog
1	EFER_1977	2028690..2029271 [+], 582	218549315	hypothetical protein	ABG57132

Download FASTA format files

Proteins        Genes

N/A

N/A