I. Summary
SecReT6 ID315 insolico
StrainEscherichia coli IAI1
Repliconchromosome [Browse all T6SS(s) in this replicon]
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1ECIAI1_0221 (yafS)234396..235118 [+], 723218552788putative S-adenosyl-L-methionine-dependent methyltransferase 
2ECIAI1_0222 (rnhA)235115..235582 [-], 468218552789ribonuclease H 
3ECIAI1_0223 (dnaQ)235647..236378 [+], 732218552790DNA polymerase III subunit epsilon 
4ECIAI1_0225 (yafT)236914..237699 [+], 786218552791putative aminopeptidase 
5ECIAI1_0226 (yafU)238325..239254 [-], 930218552792Inner membrane protein yafU 
6ECIAI1_0227239283..239765 [-], 483218552793hypothetical protein  TssD
7ECIAI1_0228239789..241231 [-], 1443218552794hypothetical protein  TssA
8ECIAI1_0229241152..244676 [-], 3525218552795IcmF-like protein  TssM
9ECIAI1_0230244695..246173 [-], 1479218552796hypothetical protein  TssA
10ECIAI1_0231246112..246855 [-], 744218552797hypothetical protein 
11ECIAI1_0232246852..249791 [-], 2940218552798putative ATP-dependent Clp proteinase Aec27 ATP-binding chain, with chaperone activity  TssH
12ECIAI1_0233249686..250447 [-], 762218552799hypothetical protein  TssL
13ECIAI1_0234250452..251783 [-], 1332218552800hypothetical protein  TssK
14ECIAI1_0235251786..252310 [-], 525218552801hypothetical protein  TssJ
15ECIAI1_0236252307..253608 [-], 1302218552802hypothetical protein  Fha
16ECIAI1_0237253612..254700 [-], 1089218552803hypothetical protein  TssG
17ECIAI1_0238254658..256508 [-], 1851218552804hypothetical protein  TssF
18ECIAI1_0239256512..256925 [-], 414218552805hypothetical protein  TssE
19ECIAI1_0240256932..258407 [-], 1476218552806hypothetical protein  TssC
20ECIAI1_0241258458..258682 [-], 225218552807hypothetical protein  TssC
21ECIAI1_0242258717..259217 [-], 501218552808hypothetical protein  TssB
22ECIAI1_0243259643..259786 [+], 144218552809hypothetical protein 
23ECIAI1_0244259913..260431 [+], 519218552810hypothetical protein  TssD
24ECIAI1_0245260641..262782 [+], 2142218552811hypothetical protein  TssI
25ECIAI1_0246262858..267084 [+], 4227218552812RhsG core protein with extension  PAAR
26ECIAI1_0247267087..267557 [+], 471218552813hypothetical protein 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Homology Effector list

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1ECIAI1_0244259913..260431 [+], 519218552810hypothetical protein ECA4275

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Proteins        Genes