I. Summary
SecReT6 ID316 insolico
StrainEscherichia coli S88
Repliconchromosome [Browse all T6SS(s) in this replicon]
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1ECS88_0227 (gloB)238994..239749 [-], 756218557148hydroxyacylglutathione hydrolase 
2ECS88_0228 (yafS)239783..240505 [+], 723218557149S-adenosyl-L-methionine-dependent methyltransferase 
3ECS88_0229 (rnhA)240502..240969 [-], 468218557150ribonuclease H 
4ECS88_0230 (dnaQ)241034..241765 [+], 732218557151DNA polymerase III subunit epsilon 
5ECS88_0231 (yafT)242303..243088 [+], 786218557152aminopeptidase 
6ECS88_0232243428..243928 [-], 501218557153hypothetical protein  TssD
7ECS88_0233243925..245424 [-], 1500218557154hypothetical protein  TssA
8ECS88_0234245294..248821 [-], 3528218557155hypothetical protein  TssM
9ECS88_0235248841..250349 [-], 1509218557156hypothetical protein  TssA
10ECS88_0236250288..251031 [-], 744218557157hypothetical protein 
11ECS88_0237251028..253787 [-], 2760218557158ATP-dependent Clp proteinase Aec27 ATP-binding chain, with chaperone activity  TssH
12ECS88_0238253797..254561 [-], 765218557159membrane protein Aec26  TssL
13ECS88_0239254566..255912 [-], 1347218557160hypothetical protein  TssK
14ECS88_0240255915..256439 [-], 525218557161hypothetical protein  TssJ
15ECS88_0241256436..257878 [-], 1443218557162hypothetical protein  Fha
16ECS88_0242257733..258782 [-], 1050218557163hypothetical protein  TssG
17ECS88_0243258746..260605 [-], 1860218557164hypothetical protein  TssF
18ECS88_0244260593..261018 [-], 426218557165hypothetical protein  TssE
19ECS88_0245261023..262507 [-], 1485218557166hypothetical protein  TssC
20ECS88_0246262530..263084 [-], 555218557167hypothetical protein  TssB
21ECS88_0247263739..264257 [+], 519218557168hypothetical protein  TssD
22ECS88_0248264478..266460 [+], 1983218557169hypothetical protein  TssI
23ECS88_0249266567..267613 [+], 1047218557170hypothetical protein 
24ECS88_0250267606..269045 [+], 1440218557171hypothetical protein  PAAR
25ECS88_0251269020..269310 [+], 291218557172hypothetical protein 
26ECS88_0252269568..269747 [+], 180218557173H-repeat associated protein 
27ECS88_0253269847..270332 [+], 486218557174transposase 
28ECS88_0254270561..271064 [+], 504218557175hypothetical protein 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Homology Effector list

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1ECS88_0247263739..264257 [+], 519218557168hypothetical protein ECA2866

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Proteins        Genes