I. Summary
SecReT6 ID319 insolico
StrainEscherichia coli ED1a
Repliconchromosome [Browse all T6SS(s) in this replicon]
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1ECED1_0217 (gloB)238973..239728 [-], 756218688082hydroxyacylglutathione hydrolase 
2ECED1_0218 (yafS)239762..240484 [+], 723218688083putative S-adenosyl-L-methionine-dependent methyltransferase 
3ECED1_0219 (rnhA)240481..240948 [-], 468218688084ribonuclease H 
4ECED1_0220 (dnaQ)241013..241744 [+], 732218688085DNA polymerase III subunit epsilon 
5ECED1_0221 (yafT)242282..243067 [+], 786218688086putative aminopeptidase 
6ECED1_0222243407..243907 [-], 501218688087hypothetical protein  TssD
7ECED1_0227245272..248799 [-], 3528218688088hypothetical protein  TssM
8ECED1_0228248819..250327 [-], 1509218688089hypothetical protein  TssA
9ECED1_0229250266..251009 [-], 744218688090hypothetical protein 
10ECED1_0230251006..253768 [-], 2763218688091putative ATP-dependent Clp proteinase Aec27 ATP-binding chain, with chaperone activity  TssH
11ECED1_0231253778..254542 [-], 765218688092hypothetical protein  TssL
12ECED1_0232254547..255893 [-], 1347218688093hypothetical protein  TssK
13ECED1_0233255896..256420 [-], 525218688094hypothetical protein  TssJ
14ECED1_0234256417..257709 [-], 1293218688095hypothetical protein  Fha
15ECED1_0235257714..258763 [-], 1050218688096hypothetical protein  TssG
16ECED1_0236258727..260586 [-], 1860218688097hypothetical protein  TssF
17ECED1_0237260574..260999 [-], 426218688098hypothetical protein  TssE
18ECED1_0238261004..262488 [-], 1485218688099hypothetical protein  TssC
19ECED1_0239262511..263065 [-], 555218688100hypothetical protein  TssB
20ECED1_0240263724..264242 [+], 519218688101hypothetical protein  TssD
21ECED1_0241264463..266694 [+], 2232218688102putative VgrG/E protein associated with Rhs elements  TssI
22ECED1_0242266707..267483 [+], 777218688103hypothetical protein 
23ECED1_0243267712..267909 [-], 198218688104hypothetical protein 
24ECED1_0244267911..268174 [+], 264218688105hypothetical protein 
25ECED1_0245268144..268464 [+], 321218688106hypothetical protein 
26ECED1_0246268449..269003 [+], 555218688107hypothetical protein 
27ECED1_0247268988..269530 [+], 543218688108hypothetical protein 
28ECED1_0248269515..271191 [+], 1677218688109hypothetical protein 
29ECED1_0249271467..271646 [+], 180218688110putative H-repeat associated protein 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Homology Effector list

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1ECED1_0240263724..264242 [+], 519218688101hypothetical protein ECA2866

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Proteins        Genes