I. Summary
SecReT6 ID320 insolico
StrainEscherichia coli 55989
Repliconchromosome [Browse all T6SS(s) in this replicon]
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1EC55989_0212 (yafS)237008..237730 [+], 723218693675S-adenosyl-L-methionine-dependent methyltransferase 
2EC55989_0213 (rnhA)237727..238194 [-], 468218693676ribonuclease H 
3EC55989_0214 (dnaQ)238259..238990 [+], 732218693677DNA polymerase III subunit epsilon 
4EC55989_0216 (yafT)239526..240311 [+], 786218693678aminopeptidase 
5EC55989_0217 (yafU)240937..241866 [-], 930218693679hypothetical protein 
6EC55989_0218241895..242377 [-], 483218693680hypothetical protein  TssD
7EC55989_0219242401..243843 [-], 1443218693681hypothetical protein  TssA
8EC55989_0220243764..247288 [-], 3525218693682IcmF-like protein  TssM
9EC55989_0221247307..248788 [-], 1482218693683hypothetical protein  TssA
10EC55989_0222248727..249470 [-], 744218693684hypothetical protein 
11EC55989_0223249467..252340 [-], 2874218693685ATP-dependent Clp proteinase Aec27 ATP-binding chain, with chaperone activity  TssH
12EC55989_0224252235..252996 [-], 762218693686membrane protein Aec26  TssL
13EC55989_0225253001..254332 [-], 1332218693687hypothetical protein  TssK
14EC55989_0226254335..254859 [-], 525218693688hypothetical protein  TssJ
15EC55989_0227254856..256157 [-], 1302218693689hypothetical protein  Fha
16EC55989_0228256161..257249 [-], 1089218693690hypothetical protein  TssG
17EC55989_0229257207..259057 [-], 1851218693691hypothetical protein  TssF
18EC55989_0230259061..259474 [-], 414218693692hypothetical protein  TssE
19EC55989_0231259481..260956 [-], 1476218693693hypothetical protein  TssC
20EC55989_0232261007..261231 [-], 225218693694hypothetical protein  TssC
21EC55989_0233261266..261766 [-], 501218693695hypothetical protein  TssB
22EC55989_0234262193..262336 [+], 144218693696hypothetical protein 
23EC55989_0235262463..262981 [+], 519218693697hypothetical protein  TssD
24EC55989_0236263191..265332 [+], 2142218693698hypothetical protein  TssI
25EC55989_0239 (ydcD)269055..269537 [+], 483218693699hypothetical protein 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Homology Effector list

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1EC55989_0235262463..262981 [+], 519218693697hypothetical protein ECA4275

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Proteins        Genes