I. Summary
SecReT6 ID321 insolico
StrainEscherichia coli 55989
Repliconchromosome [Browse all T6SS(s) in this replicon]
T6SS TypeType i; subtype i4b
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1EC55989_32813366116..3367639 [-], 1524218696583reverse transcriptase-like protein from prophage or plasmid 
2EC55989_32823368231..3368803 [-], 573218696584transposase ORF B (fragment), IS629 
3EC55989_32833369231..3371780 [-], 2550218696585hypothetical protein  TssH
4EC55989_32843371784..3375197 [-], 3414218696586hypothetical protein  TssM
5EC55989_32853375194..3375796 [-], 603218696587hypothetical protein  TssL
6EC55989_32863375781..3376095 [-], 315218696588hypothetical protein 
7EC55989_32873376123..3377553 [-], 1431218696589hypothetical protein  TssK
8EC55989_32883377554..3378108 [-], 555218696590hypothetical protein  TssJ
9EC55989_32893378113..3379189 [-], 1077218696591hypothetical protein  TssA
10EC55989_32903379193..3379498 [-], 306218696592hypothetical protein  PAAR
11EC55989_32913379502..3379969 [-], 468218696593hypothetical protein 
12EC55989_32923379980..3381962 [-], 1983218696594hypothetical protein  TssI
13EC55989_32933381975..3382934 [-], 960218696595hypothetical protein  TssG
14EC55989_32943382898..3384700 [-], 1803218696596hypothetical protein  TssF
15EC55989_32953384693..3385115 [-], 423218696597hypothetical protein  TssE
16EC55989_32963385125..3385631 [-], 507218696598hypothetical protein  AaiC (e)
17EC55989_32973385641..3387119 [-], 1479218696599hypothetical protein  TssC
18EC55989_32983387122..3387598 [-], 477218696600hypothetical protein  TssB
19EC55989_32993388044..3389252 [+], 1209218696601transposase, IS4 family, IS10L 
20EC55989_33003389332..3389640 [+], 309218696602transposase (fragment), IS630 family 
21EC55989_33023389876..3390076 [+], 201218696603transposase (fragment), IS630 family 
22EC55989_33033390130..3390348 [+], 219218696604transposase (fragment), IS630 family 
23EC55989_33053390457..3390942 [-], 486218696605hypothetical protein 
24EC55989_33063390836..3391042 [-], 207218696606polyketide synthase pksM (fragment) 
25EC55989_33073391214..3391609 [+], 396218696607hypothetical protein 
26EC55989_33083391435..3391632 [+], 198218696608hypothetical protein 
27EC55989_33093391663..3391986 [-], 324218696609hypothetical protein 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Homology Effector list

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1EC55989_32963385125..3385631 [-], 507218696598hypothetical protein EC042_4564

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Proteins        Genes