I. Summary
Component | TssH | TssD | TssL | TssI | TssA | TssB | TssC | TssE | TssF |
Number | 1 | 2 | 1 | 1 | 2 | 1 | 1 | 1 | 1 |
Component | TssG | TssJ | TssK | TssM |
Number | 1 | 1 | 1 | 1 |
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III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | ECUMN_0211 (rnhA) | 238606..239073 [-], 468 | 218703463 | ribonuclease H | |
2 | ECUMN_0212 (dnaQ) | 239138..239869 [+], 732 | 218703464 | DNA polymerase III subunit epsilon | |
3 | ECUMN_0213 (yafT) | 240405..241190 [+], 786 | 218703465 | putative aminopeptidase | |
4 | ECUMN_0214 | 241530..242009 [-], 480 | 218703466 | hypothetical protein | TssD |
5 | ECUMN_0215 | 242027..243526 [-], 1500 | 218703467 | hypothetical protein | TssA |
6 | ECUMN_0216 | 243396..246923 [-], 3528 | 218703468 | hypothetical protein | TssM |
7 | ECUMN_0217 | 246943..248451 [-], 1509 | 218703469 | hypothetical protein | TssA |
8 | ECUMN_0218 | 248390..249133 [-], 744 | 218703470 | hypothetical protein | |
9 | ECUMN_0219 | 249130..251862 [-], 2733 | 218703471 | putative ATP-dependent Clp proteinase Aec27 ATP-binding chain, with chaperone activity | TssH |
10 | ECUMN_0220 | 251872..252645 [-], 774 | 218703472 | hypothetical protein | TssL |
11 | ECUMN_0221 | 252650..253996 [-], 1347 | 218703473 | hypothetical protein | TssK |
12 | ECUMN_0222 | 253999..254523 [-], 525 | 218703474 | hypothetical protein | TssJ |
13 | ECUMN_0223 | 254520..255908 [-], 1389 | 218703475 | hypothetical protein | Fha |
14 | ECUMN_0224 | 255817..256866 [-], 1050 | 218703476 | hypothetical protein | TssG |
15 | ECUMN_0225 | 256830..258689 [-], 1860 | 218703477 | hypothetical protein | TssF |
16 | ECUMN_0226 | 258677..259102 [-], 426 | 218703478 | hypothetical protein | TssE |
17 | ECUMN_0227 | 259107..260591 [-], 1485 | 218703479 | hypothetical protein | TssC |
18 | ECUMN_0228 | 260614..261117 [-], 504 | 218703480 | hypothetical protein | TssB |
19 | ECUMN_0229 | 261820..262338 [+], 519 | 218703481 | hypothetical protein | TssD |
20 | ECUMN_0230 | 262559..264517 [+], 1959 | 218703482 | putative VgrG/E protein | TssI |
21 | ECUMN_0231 | 264514..265356 [+], 843 | 218703483 | hypothetical protein | |
22 | ECUMN_0232 | 265378..266949 [+], 1572 | 218703484 | hypothetical protein | |
23 | ECUMN_0233 | 267016..268026 [+], 1011 | 218703485 | hypothetical protein | |
24 | ECUMN_0234 (yhhI) | 268336..269295 [+], 960 | 218703486 | putative transposase | |
25 | ECUMN_0235 | 269323..269463 [-], 141 | 218703487 | hypothetical protein | |
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Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein
V. Investigation of the genomic context of the T6SS gene cluster.