I. Summary
SecReT6 ID322 insolico
StrainEscherichia coli UMN026
Repliconchromosome [Browse all T6SS(s) in this replicon]
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1ECUMN_0211 (rnhA)238606..239073 [-], 468218703463ribonuclease H 
2ECUMN_0212 (dnaQ)239138..239869 [+], 732218703464DNA polymerase III subunit epsilon 
3ECUMN_0213 (yafT)240405..241190 [+], 786218703465putative aminopeptidase 
4ECUMN_0214241530..242009 [-], 480218703466hypothetical protein  TssD
5ECUMN_0215242027..243526 [-], 1500218703467hypothetical protein  TssA
6ECUMN_0216243396..246923 [-], 3528218703468hypothetical protein  TssM
7ECUMN_0217246943..248451 [-], 1509218703469hypothetical protein  TssA
8ECUMN_0218248390..249133 [-], 744218703470hypothetical protein 
9ECUMN_0219249130..251862 [-], 2733218703471putative ATP-dependent Clp proteinase Aec27 ATP-binding chain, with chaperone activity  TssH
10ECUMN_0220251872..252645 [-], 774218703472hypothetical protein  TssL
11ECUMN_0221252650..253996 [-], 1347218703473hypothetical protein  TssK
12ECUMN_0222253999..254523 [-], 525218703474hypothetical protein  TssJ
13ECUMN_0223254520..255908 [-], 1389218703475hypothetical protein  Fha
14ECUMN_0224255817..256866 [-], 1050218703476hypothetical protein  TssG
15ECUMN_0225256830..258689 [-], 1860218703477hypothetical protein  TssF
16ECUMN_0226258677..259102 [-], 426218703478hypothetical protein  TssE
17ECUMN_0227259107..260591 [-], 1485218703479hypothetical protein  TssC
18ECUMN_0228260614..261117 [-], 504218703480hypothetical protein  TssB
19ECUMN_0229261820..262338 [+], 519218703481hypothetical protein  TssD
20ECUMN_0230262559..264517 [+], 1959218703482putative VgrG/E protein  TssI
21ECUMN_0231264514..265356 [+], 843218703483hypothetical protein 
22ECUMN_0232265378..266949 [+], 1572218703484hypothetical protein 
23ECUMN_0233267016..268026 [+], 1011218703485hypothetical protein 
24ECUMN_0234 (yhhI)268336..269295 [+], 960218703486putative transposase 
25ECUMN_0235269323..269463 [-], 141218703487hypothetical protein 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Homology Effector list

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1ECUMN_0229261820..262338 [+], 519218703481hypothetical protein ECA2866

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Proteins        Genes