I. Summary

SecReT6 ID	323
Strain	Vibrio splendidus LGP32
Replicon	chromosome I [Browse all T6SS(s) in this replicon]
Accession	NC_011753
Location	1419523..1445691
Comment
Function	N/A
T6SS Type	Type i; subtype i5
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	1	2	1	1	2	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	1

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	VS_1316	1417460..1418503 [-], 1044	218709307	two-component regulatory system response regulator
2	VS_1317	1418722..1419408 [-], 687	218709308	hypothetical protein
3	VS_1318	1419523..1422915 [-], 3393	218709309	hypothetical protein	TssM
4	VS_1319	1422918..1424120 [-], 1203	218709310	hypothetical protein	TssL
5	VS_1320	1424120..1425493 [-], 1374	218709311	hypothetical protein	TssK
6	VS_1321	1425502..1425981 [-], 480	218709312	hypothetical protein	TssJ
7	VS_1322	1425978..1426928 [-], 951	218709313	hypothetical protein	Fha
8	VS_1323	1426932..1427660 [-], 729	218709314	hypothetical protein
9	VS_1324	1427647..1428645 [-], 999	218709315	hypothetical protein
10	VS_1325	1428642..1431266 [-], 2625	218709316	hypothetical protein
11	VS_1326	1431277..1433889 [-], 2613	218709317	protein disaggregation chaperone	TssH
12	VS_1327	1433936..1434868 [-], 933	218709318	hypothetical protein	TssG
13	VS_1328	1434915..1436666 [-], 1752	218709319	hypothetical protein	TssF
14	VS_1329	1436659..1437081 [-], 423	218709320	hypothetical protein	TssE
15	VS_1330	1437078..1438532 [-], 1455	218709321	hypothetical protein	TssC
16	VS_1331	1438513..1439991 [-], 1479	218709322	hypothetical protein	TssC
17	VS_1332	1439991..1440494 [-], 504	218709323	hypothetical protein	TssB
18	VS_1333	1440514..1441035 [-], 522	218709324	hypothetical protein	TssD
19	VS_1334	1441070..1442566 [-], 1497	218709325	hypothetical protein	TssA
20	VS_1335	1442749..1443048 [-], 300	218709326	hypothetical protein	PAAR
21	VS_1336	1443073..1443633 [-], 561	218709327	hypothetical protein
22	VS_1337	1443693..1445192 [-], 1500	218709328	hypothetical protein	TssI
23	VS_1338	1445092..1445691 [-], 600	218709329	hypothetical protein	TssI
24	VS_1339	1445835..1446044 [+], 210	218709330	hypothetical protein
25	VS_1340	1446192..1447487 [+], 1296	218709331	hypothetical protein

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files

Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

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